Non-Coding RNA Search

Ss1.1-Pig4-TMW8066A08.3.5

Sequence:


               
               AAAAGAGAAAGATTATCCACTTTTTAAAAGAAAGAAGTAGTCCGTTGCCAGAGGAAAAAC
ATTCCACTTTTGGTAGGTTTGAAATTCAAGAGCAAGAGGCATAAATCTCTACCATCCTTG
GTTTGGAGAAAGGGCAGACATCCGAGTCTTCTTTGGAAAAACGTGACCTTCGCAGAAACT
TTTCAAGAGAAAGGAGAATTCTGCCCCGAGGAACCTGATGGGCACCCCCCCGCCCCCGCC
CCGATGTTCTCAGGAGGCAGCGCTGGACGGTGACAGAAGCACAGCCACCTCCCCTCTCCA
CTGGCTTCTGTGCAGTTGTCTCGCTGTGAGCCGGTTGCCCTGAGTTCTGTAGCCGTGGAC
GTGTAAGGTCAGCATCGAGGGTCATGGGTACGGGCGGGGGGCAGGTGCTGAGCAAGGGTG
CTCATCCTGGGATGAGGCCCTGCCCGCCTGTGTCCCGGGCCCCTGCCTGCTGCTTCCCGC
GCAGCCCTCTGGACAGTCGCGGCGGAAGACGCGGGATCTGCCTGGAAACCAAACCCCGGA
TGAAACCCATGGTAGCAGTTAATCGTCGTCACTCGCCTCTTTCACATCCTGTCCCCAAGC
GGAAGCCGTCCCCTAATACGGCGTTTTTTTCTTCCGATGATGAAAATCAAGCAGAAGTGA
TTTCCACCAAGAACAAAAAGCACACAATTCCGTTGGTGGACTGGACCCTGTAACCAGATG
AGAATAAATTTCTTGTCAGTGGTTATGAATGAGCTCCTGTTGCCCTGTGCTCTCTGCAGC
CGTATTTATTGTACGGAACAGTCAGCCCGAAAACCTTCCAAAATCGCCCAGGGCTCCGTG
ACTAAATGTTTGGAGAGGAGAAACCGAGATATTTTAAGAATGATTTGCTAATGAAAGGAG
TAAATATTTTCATTTAAATCCGAAACAGATTTCAGTTATTTCGTATTTCTGTTCTCCTCC
TCTATTTAAAATGACAGAATTGCAGCTGTGCCTGGTTCCCCAGATGTCGTCTGTAACCAG
TAGCCTGATTGTGGTACATGCAGTGAAACTCCGTCCCAAGAGCCTGATTTCTCGGCTGGC
GTACACACTCGTTCAGTTCATCCCCGCTGGATGTGTTCGGTCAGCGTTGTCTCACACTAT
TCCATAAAAACCCAGAAGTGGCATTGGAGATGTTACCACGGAAGGGAGTGATCACTTTTA
AAATCGCACTACGTTCAAGTTAATTTTCAACCTCGCTCATTTTTACTCTCCTCATTAAAA
GCGCCACGTGTCAATCATAAAAGAATCTACTTACCAAAGTTTAAAAAATAAAATGAAAAA
TTTCTAGCAGGAACTTATGTTGGAGACTTGGTGATTTGCACAATAAGAACTTCTCAGAGA
TGTGCAGTTCTCTCTGCATTTTTCTTTAAAGTGGTACAGTGAGGCACTGCAATATAGAAT
TATGAGAGCATTACTGAATATGTGTATTATAAAATCAATAATATAAACAAAATTTGAAGC
TAGAACTATTTGGGGCCACCGTAATAGCTATCCTCAAATACACTTTTAGAGTTGGGTGTA
CATTCTATGTGTAAAAAAGTAAATTCTTCGTTTTAACAGAACTCTGAAGATTGACCTTTT
TAGTGTACTTTTATAGCATGTAAATTAAAATAGAATATATTTTGGCAAGAATATACTTTA
GCAAAGATTGCCATAAACCCCTTTGATCATTTTTATATTTGCACTGTGAAGAGGGTTTAA
ATTTCAGTGTAGCGAGGTGGTGGCAGAGGAATGAAAGACGAGGAACTTCCTTTACAGTGA
CGGTTATTCGGGGAGGTCCTGAAATGGTACTAACCGCTTAGTACACGTGTTTTCTCAGTG
CTTTTCCCCTGGTGATGGTGTGTATACATTTACTGTCTGAGAATAAAAAGACCCCACCCA
CACGCTCTTTTGTTTTCATTTACAGTATCTCTTTGTTTAAAATTTGGTTTGAACAAAGTA
TCACTTTGTTCATGGGAAAAGAAGAGATTATAAAAGAAGAGACAGTGTATATATATACAC
ACACACTGTATGTGTCTAGGAGATGGCTTCTGATATGTGTCAATCAGTTCTCTGAGTCTG
TTTCTATAACTGAGACAGGAAAATAAAAGGGAAACAAATCACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAGAAAGATTATCCACTTTTTAAAAGAAAGAAGTAGTCCGTTGCCAGAGGAAAAAC
ATTCCACTTTTGGTAGGTTTGAAATTCAAGAGCAAGAGGCATAAATCTCTACCATCCTTG
GTTTGGAGAAAGGGCAGACATCCGAGTCTTCTTTGGAAAAACGTGACCTTCGCAGAAACT
TTTCAAGAGAAAGGAGAATTCTGCCCCGAGGAACCTGATGGGCACCCCCCCGCCCCCGCC
CCGATGTTCTCAGGAGGCAGCGCTGGACGGTGACAGAAGCACAGCCACCTCCCCTCTCCA
CTGGCTTCTGTGCAGTTGTCTCGCTGTGAGCCGGTTGCCCTGAGTTCTGTAGCCGTGGAC
GTGTAAGGTCAGCATCGAGGGTCATGGGTACGGGCGGGGGGCAGGTGCTGAGCAAGGGTG
CTCATCCTGGGATGAGGCCCTGCCCGCCTGTGTCCCGGGCCCCTGCCTGCTGCTTCCCGC
GCAGCCCTCTGGACAGTCGCGGCGGAAGACGCGGGATCTGCCTGGAAACCAAACCCCGGA
TGAAACCCATGGTAGCAGTTAATCGTCGTCACTCGCCTCTTTCACATCCTGTCCCCAAGC
GGAAGCCGTCCCCTAATACGGCGTTTTTTTCTTCCGATGATGAAAATCAAGCAGAAGTGA
TTTCCACCAAGAACAAAAAGCACACAATTCCGTTGGTGGACTGGACCCTGTAACCAGATG
AGAATAAATTTCTTGTCAGTGGTTATGAATGAGCTCCTGTTGCCCTGTGCTCTCTGCAGC
CGTATTTATTGTACGGAACAGTCAGCCCGAAAACCTTCCAAAATCGCCCAGGGCTCCGTG
ACTAAATGTTTGGAGAGGAGAAACCGAGATATTTTAAGAATGATTTGCTAATGAAAGGAG
TAAATATTTTCATTTAAATCCGAAACAGATTTCAGTTATTTCGTATTTCTGTTCTCCTCC
TCTATTTAAAATGACAGAATTGCAGCTGTGCCTGGTTCCCCAGATGTCGTCTGTAACCAG
TAGCCTGATTGTGGTACATGCAGTGAAACTCCGTCCCAAGAGCCTGATTTCTCGGCTGGC
GTACACACTCGTTCAGTTCATCCCCGCTGGATGTGTTCGGTCAGCGTTGTCTCACACTAT
TCCATAAAAACCCAGAAGTGGCATTGGAGATGTTACCACGGAAGGGAGTGATCACTTTTA
AAATCGCACTACGTTCAAGTTAATTTTCAACCTCGCTCATTTTTACTCTCCTCATTAAAA
GCGCCACGTGTCAATCATAAAAGAATCTACTTACCAAAGTTTAAAAAATAAAATGAAAAA
TTTCTAGCAGGAACTTATGTTGGAGACTTGGTGATTTGCACAATAAGAACTTCTCAGAGA
TGTGCAGTTCTCTCTGCATTTTTCTTTAAAGTGGTACAGTGAGGCACTGCAATATAGAAT
TATGAGAGCATTACTGAATATGTGTATTATAAAATCAATAATATAAACAAAATTTGAAGC
TAGAACTATTTGGGGCCACCGTAATAGCTATCCTCAAATACACTTTTAGAGTTGGGTGTA
CATTCTATGTGTAAAAAAGTAAATTCTTCGTTTTAACAGAACTCTGAAGATTGACCTTTT
TAGTGTACTTTTATAGCATGTAAATTAAAATAGAATATATTTTGGCAAGAATATACTTTA
GCAAAGATTGCCATAAACCCCTTTGATCATTTTTATATTTGCACTGTGAAGAGGGTTTAA
ATTTCAGTGTAGCGAGGTGGTGGCAGAGGAATGAAAGACGAGGAACTTCCTTTACAGTGA
CGGTTATTCGGGGAGGTCCTGAAATGGTACTAACCGCTTAGTACACGTGTTTTCTCAGTG
CTTTTCCCCTGGTGATGGTGTGTATACATTTACTGTCTGAGAATAAAAAGACCCCACCCA
CACGCTCTTTTGTTTTCATTTACAGTATCTCTTTGTTTAAAATTTGGTTTGAACAAAGTA
TCACTTTGTTCATGGGAAAAGAAGAGATTATAAAAGAAGAGACAGTGTATATATATACAC
ACACACTGTATGTGTCTAGGAGATGGCTTCTGATATGTGTCAATCAGTTCTCTGAGTCTG
TTTCTATAACTGAGACAGGAAAATAAAAGGGAAACAAATCACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               668-816, - strand, RNAz p=0.966405
               

               
               1454-1567, + strand, RNAz p=0.692048

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               668-816, - strand, RNAz p=0.966405
               

               
               1454-1567, + strand, RNAz p=0.692048

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               568-751, - strand, RNAmicro p=0.984028

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               568-751, - strand, RNAmicro p=0.984028

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-423, gnl|bosTau2|chr6 (58011125-58010698)
               

               
               1-423, gnl|Hg17|chr4 (85927520-85927941)
               


               
               431-2127, gnl|bosTau2|chr6 (58010654-58008932)
               

               
               431-2127, gnl|Hg17|chr4 (85927949-85929657)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-423, gnl|bosTau2|chr6 (58011125-58010698)
               

               
               1-423, gnl|Hg17|chr4 (85927520-85927941)
               


               
               431-2127, gnl|bosTau2|chr6 (58010654-58008932)
               

               
               431-2127, gnl|Hg17|chr4 (85927949-85929657)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               jej (0.296765)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               sag (0.182715)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               jej (0.296765)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               sag (0.182715)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	668-816, - strand, RNAz p=0.966405
	1454-1567, + strand, RNAz p=0.692048

	1-423, gnl\|bosTau2\|chr6 (58011125-58010698)
	1-423, gnl\|Hg17\|chr4 (85927520-85927941)

	431-2127, gnl\|bosTau2\|chr6 (58010654-58008932)
	431-2127, gnl\|Hg17\|chr4 (85927949-85929657)

	pro (0.512033)
	jej (0.296765)
	tra (0.246184)
	clu (0.239292)
	sag (0.182715)
	nje (0.16592)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	lyg (0.133103)
	nmm (0.132802)
	pgl (0.118483)
	cbl (0.114797)
	spc (0.113366)