Ss1.1-Pig4-TMW8066A11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTCCGGCTGGTGGGGGAGCTGGTGTCCATCTTTGGAGCCGTGATCATTCTGCTCATAG AGATTCCAGACATCTTCCGCGTGGGGGTCATTCGCTTCTTTGGACAGACCATCCTTGGCG GGCCATTCCATGTCCTCTTCATCACCTATGCCTGCATGGTGCTGGTGACCATGGTGATGC GGCTCTCCAACACCGACGGCGAGGTGGTACCCATGTCCTTCGCCCTGGTGCTGGGCTGGT GCAATGTCATGTACTTCGCCCGAGGATTCCACATGCTGGGTCCCTTCACCGTCATGATCC AGAAGATGATTTTTGGCGATCTGATGCGATTCTGCTGGCTGATGGCTGTGGTCATCCTGG GCTTTGCCTCAGCTTTCTTTATCATCTTCCAGACAGAGGACCCTAACAAGCTGGGCCATT TCTACAGTTACCCCATGGCGCTCTTTAGCACCTTTGAGCTGTTTCTCACCATCATCGATG GCCCCGCCAACTATGACGTGGACCTGCCCTTCATGTACAGCGTCACCTATGCCGCCTTCG CCATCATTGCCGCTCTGCTCATGCTCAACCTCCTTATCGCCATGATGGGTGACACGCACT GGCGGGTGGCCCACGAGCGGGATGAGCTCTGGCGGGCCCAGGTCGTGGCCACCACAGTGA TGCTGGAACGGAAGCTGCCTCGCTGCCTGTGGCCTCGCTCCGGGATCTGCGGGTACAAGT TTGGGCTGGGGGACCGCTGGTTCCTGCGGGTGGAAGACAGACAGGATATCAACCGGCAGC GTGTCCAGCGCTATGCCCAGGCCTTCTACAACTCGGACTCTGACGAGGACATGGAGAAAC CACGTCTGGGCGGCCCCTTCAAACCCCCCCAGTCCCTTCATCTCCCCTCAGTGTCTCGAA GTACCTCCCGCAGCAGCACCAACTGGGAGAGGCTTCGGCAAGGGACCATGAAGTCAGAGC TGATGGGAGTGGTCAACAGGGCCCTGGAGGACGGGGACAGCTGGGAGTACCAGATCTGAG TGCCTCCTGTCACTGTGGAGCCCAGCGGCATCCAAAAACCAAAACGCCCCAGACCTCCCA CCTGCCAGGTCAAGGGAGCAGAGGAGAACAAATGGAAGCCCAGGAGTGGGGCTCACATCT CACCCCAAAGCCAGGGCCTCACCAGGAGGACCCCGCCTCACCCACGCTGGCCCTTAGCGA ATGCGGCTGCACTGAGCAAAGCACTTTAGGAGAGGCTTGCTGCCCAGGCACCAGCCGCTA CCCCGGTGTCACAGCTGCAGCCAGCTGAGGCGGCTGTGGAAAGGGTGTAAATGAGGGAAT GGGTGCCCCCTGGGGGTGAAGCCACCTCCTACCTTCCAATAAAGTCATTGCCTGCTCCGT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTCCGGCTGGTGGGGGAGCTGGTGTCCATCTTTGGAGCCGTGATCATTCTGCTCATAG AGATTCCAGACATCTTCCGCGTGGGGGTCATTCGCTTCTTTGGACAGACCATCCTTGGCG GGCCATTCCATGTCCTCTTCATCACCTATGCCTGCATGGTGCTGGTGACCATGGTGATGC GGCTCTCCAACACCGACGGCGAGGTGGTACCCATGTCCTTCGCCCTGGTGCTGGGCTGGT GCAATGTCATGTACTTCGCCCGAGGATTCCACATGCTGGGTCCCTTCACCGTCATGATCC AGAAGATGATTTTTGGCGATCTGATGCGATTCTGCTGGCTGATGGCTGTGGTCATCCTGG GCTTTGCCTCAGCTTTCTTTATCATCTTCCAGACAGAGGACCCTAACAAGCTGGGCCATT TCTACAGTTACCCCATGGCGCTCTTTAGCACCTTTGAGCTGTTTCTCACCATCATCGATG GCCCCGCCAACTATGACGTGGACCTGCCCTTCATGTACAGCGTCACCTATGCCGCCTTCG CCATCATTGCCGCTCTGCTCATGCTCAACCTCCTTATCGCCATGATGGGTGACACGCACT GGCGGGTGGCCCACGAGCGGGATGAGCTCTGGCGGGCCCAGGTCGTGGCCACCACAGTGA TGCTGGAACGGAAGCTGCCTCGCTGCCTGTGGCCTCGCTCCGGGATCTGCGGGTACAAGT TTGGGCTGGGGGACCGCTGGTTCCTGCGGGTGGAAGACAGACAGGATATCAACCGGCAGC GTGTCCAGCGCTATGCCCAGGCCTTCTACAACTCGGACTCTGACGAGGACATGGAGAAAC CACGTCTGGGCGGCCCCTTCAAACCCCCCCAGTCCCTTCATCTCCCCTCAGTGTCTCGAA GTACCTCCCGCAGCAGCACCAACTGGGAGAGGCTTCGGCAAGGGACCATGAAGTCAGAGC TGATGGGAGTGGTCAACAGGGCCCTGGAGGACGGGGACAGCTGGGAGTACCAGATCTGAG TGCCTCCTGTCACTGTGGAGCCCAGCGGCATCCAAAAACCAAAACGCCCCAGACCTCCCA CCTGCCAGGTCAAGGGAGCAGAGGAGAACAAATGGAAGCCCAGGAGTGGGGCTCACATCT CACCCCAAAGCCAGGGCCTCACCAGGAGGACCCCGCCTCACCCACGCTGGCCCTTAGCGA ATGCGGCTGCACTGAGCAAAGCACTTTAGGAGAGGCTTGCTGCCCAGGCACCAGCCGCTA CCCCGGTGTCACAGCTGCAGCCAGCTGAGGCGGCTGTGGAAAGGGTGTAAATGAGGGAAT GGGTGCCCCCTGGGGGTGAAGCCACCTCCTACCTTCCAATAAAGTCATTGCCTGCTCCGT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 140-258, + strand, RNAz p=0.612977 | |
| 370-488, - strand, RNAz p=0.612109 | |
| 409-568, - strand, RNAz p=0.862787 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 140-258, + strand, RNAz p=0.612977 | |
| 370-488, - strand, RNAz p=0.612109 | |
| 409-568, - strand, RNAz p=0.862787 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AY203947, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 140-305, gnl|bosTau2|chr4 (60462720-60462885) | |
| 140-305, gnl|canFam2|chr16 (9681715-9681541) | |
| 140-305, gnl|danRer3|chr3 (38540333-38540503) | |
| 140-305, gnl|dasNov1|scaffold_393 (25214-25040) | |
| 140-305, gnl|echTel1|scaffold_194428 (1243-1069) | |
| 140-305, gnl|fr1|chrUn (293224032-293224202) | |
| 140-305, gnl|galGal2|chr1 (72029137-72028967) | |
| 140-305, gnl|hg17|chr7 (142089076-142089250) | |
| 140-305, gnl|Hg17|chr7 (142089246-142089081) | |
| 140-305, gnl|loxAfr1|scaffold_21485 (1196-1022) | |
| 140-305, gnl|mm7|chr6 (41555260-41555434) | |
| 140-305, gnl|Mm7|chr6 (41555430-41555265) | |
| 140-305, gnl|monDom2|scaffold_7 (1066103-1066277) | |
| 140-305, gnl|oryCun1|scaffold_191042 (11376-11550) | |
| 140-305, gnl|panTro1|chr6 (144880914-144881088) | |
| 140-305, gnl|rheMac2|chr3 (180521022-180521196) | |
| 140-305, gnl|rn3|chr4 (69611716-69611890) | |
| 140-305, gnl|tetNig1|chr8 (8100930-8101100) | |
| 140-305, gnl|xenTro1|scaffold_1761 (7744-7570) | |
| 370-643, gnl|bosTau2|chr4 (60463803-60464076) | |
| 370-643, gnl|canFam2|chr16 (9682767-9682544) | |
| 370-643, gnl|danRer3|chr3 (38535560-38535782) | |
| 370-643, gnl|dasNov1|scaffold_393 (26257-26033) | |
| 370-643, gnl|echTel1|scaffold_182597 (1268-1044) | |
| 370-643, gnl|fr1|chrUn (293223487-293223699) | |
| 370-643, gnl|galGal2|chr1 (72074624-72074412) | |
| 370-643, gnl|hg17|chr7 (142088025-142088249) | |
| 370-643, gnl|Hg17|chr7 (142088309-142088036) | |
| 370-643, gnl|loxAfr1|scaffold_21485 (2324-2100) | |
| 370-643, gnl|mm7|chr6 (41553873-41554097) | |
| 370-643, gnl|Mm7|chr6 (41554157-41553884) | |
| 370-643, gnl|monDom2|scaffold_7 (1065063-1065287) | |
| 370-643, gnl|oryCun1|scaffold_185618 (50073-50298) | |
| 370-643, gnl|panTro1|chr6 (144879863-144880087) | |
| 370-643, gnl|rheMac2|chr3 (180519977-180520201) | |
| 370-643, gnl|rn3|chr4 (69610313-69610537) | |
| 370-643, gnl|tetNig1|chr8 (8100380-8100592) | |
| 370-643, gnl|xenTro1|scaffold_1761 (34794-35018) | |
| 748-1377, gnl|bosTau2|chr4 (60465475-60466107) | |
| 748-1377, gnl|Hg17|chr7 (142086580-142085801) | |
| 748-1377, gnl|Mm7|chr6 (41552430-41551698) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-305, gnl|bosTau2|chr4 (60462720-60462885) | |
| 140-305, gnl|canFam2|chr16 (9681715-9681541) | |
| 140-305, gnl|danRer3|chr3 (38540333-38540503) | |
| 140-305, gnl|dasNov1|scaffold_393 (25214-25040) | |
| 140-305, gnl|echTel1|scaffold_194428 (1243-1069) | |
| 140-305, gnl|fr1|chrUn (293224032-293224202) | |
| 140-305, gnl|galGal2|chr1 (72029137-72028967) | |
| 140-305, gnl|hg17|chr7 (142089076-142089250) | |
| 140-305, gnl|Hg17|chr7 (142089246-142089081) | |
| 140-305, gnl|loxAfr1|scaffold_21485 (1196-1022) | |
| 140-305, gnl|mm7|chr6 (41555260-41555434) | |
| 140-305, gnl|Mm7|chr6 (41555430-41555265) | |
| 140-305, gnl|monDom2|scaffold_7 (1066103-1066277) | |
| 140-305, gnl|oryCun1|scaffold_191042 (11376-11550) | |
| 140-305, gnl|panTro1|chr6 (144880914-144881088) | |
| 140-305, gnl|rheMac2|chr3 (180521022-180521196) | |
| 140-305, gnl|rn3|chr4 (69611716-69611890) | |
| 140-305, gnl|tetNig1|chr8 (8100930-8101100) | |
| 140-305, gnl|xenTro1|scaffold_1761 (7744-7570) | |
| 370-643, gnl|bosTau2|chr4 (60463803-60464076) | |
| 370-643, gnl|canFam2|chr16 (9682767-9682544) | |
| 370-643, gnl|danRer3|chr3 (38535560-38535782) | |
| 370-643, gnl|dasNov1|scaffold_393 (26257-26033) | |
| 370-643, gnl|echTel1|scaffold_182597 (1268-1044) | |
| 370-643, gnl|fr1|chrUn (293223487-293223699) | |
| 370-643, gnl|galGal2|chr1 (72074624-72074412) | |
| 370-643, gnl|hg17|chr7 (142088025-142088249) | |
| 370-643, gnl|Hg17|chr7 (142088309-142088036) | |
| 370-643, gnl|loxAfr1|scaffold_21485 (2324-2100) | |
| 370-643, gnl|mm7|chr6 (41553873-41554097) | |
| 370-643, gnl|Mm7|chr6 (41554157-41553884) | |
| 370-643, gnl|monDom2|scaffold_7 (1065063-1065287) | |
| 370-643, gnl|oryCun1|scaffold_185618 (50073-50298) | |
| 370-643, gnl|panTro1|chr6 (144879863-144880087) | |
| 370-643, gnl|rheMac2|chr3 (180519977-180520201) | |
| 370-643, gnl|rn3|chr4 (69610313-69610537) | |
| 370-643, gnl|tetNig1|chr8 (8100380-8100592) | |
| 370-643, gnl|xenTro1|scaffold_1761 (34794-35018) | |
| 748-1377, gnl|bosTau2|chr4 (60465475-60466107) | |
| 748-1377, gnl|Hg17|chr7 (142086580-142085801) | |
| 748-1377, gnl|Mm7|chr6 (41552430-41551698) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.531138) | |
| cty (0.20816) | |
| duo (0.172801) |