Non-Coding RNA Search

Ss1.1-Pig4-TMW8066A21.3

Sequence:


               
               CCCAAAGTGTTTATTTTTAGGTGGAAAAGGGGAAGGGAGTAACACAGAGGCAACTTTTGG
CATCTTTTTTCCAGGCCATCACCCCATGTGCTCCCCAACCCAAAGCACTGGCAGGAGGGC
CCCCAGGACAGGCTGAGGGGCCAGATAGTCACACGGTCAGTCAGAGAGATCTGTACAACC
CTGGAGGGCCGGGATTCAAGGGTCCGTCCCAGCTCCCTTGTCCTGGAACAGGGTTAGAGC
TCAGGGGCATAGGGCTCCCCGGTGGGTGAGGGCACCCGCAGCTCAGCATCGTGCCTCACC
ACGGTGAAGAGCCCCACCACCGCCAGCAGAGCCATCACCATAACAGCCGAGCAGATGCTG
AACATGTTCCGAGTGCCTGTTTTGCGATCGCTGTCATGGAGGACCAGGAGCCCCAGGCAG
GCCAGTAAGTGCAGGGGCACCCGGAACCAGTTGAGCACACCCGTTTGCTCTGTGTCAGGG
ATCACCTTTCTCCGCAGGAAGCTCATGCTGGGAAAATACAGCCCACAGGCCAGTTCGATG
AGGAGGAAGGCGATGAAGGACTCCACTGGACTCTCCTGGCCTGGGCTGGTGGAGAAAGTC
AACATGAAGAGGGAGAAGACGACGATGAGCACGGCAAAGGAGAGAAGGTGCATAGGCTGT
AGGTGGTACCTCTTGGAGGTAGCGATGCGGTACAGGGACGAGCCGAGCAGGCTGGCTGCC
ATGAAGCTGGAGAAGATGATGCCCAGCGGGGCCCCGTGTGGGTCCAGCACAGGCGTCCAG
AGGAAGACGAAGATGAAGATGACACTCTCGAACAGGGCCTGGATGGTGCCTAGCAGCAGC
ACACGACGGTCCGACAGGAGGCAGCGTAGGCCTCCAGCACAGGTCCTTGAGAAGGCACGC
TGCCGATCATAGTTTTCTCCCCAGCTGTGAAGGGCCAAGGCCCCAGCCAGAGCCAAGAGC
GGGATGGCGGCCACGAAGGGCGCTACGGGCCCCAGGCCCATCCAGCAGGCCACGGCCTCA
GCTGCCACACCTGCCATGACAGCCAGCACGTGGTTCCAGAAGGCAGCTCGGGCGAAGGTA
GCTGGGATCCACTCAGCAGGGAAGTCATGCCGTTCCACATGCTCATGGATGTACCAGGCC
TCAAAGGCCGAGAAGAGCAGGGCTGTGGACAGCCCACCAAGTGCTCGGCCTACCAGCAGC
ACAAAGTAATCCTGGGAGAGTTTGGTTAAGCAGCAGAGAGAGTAAGTGAGGGAGAAGAGG
ACACAAGACTTCTTGCGACCCAGCCAATCCACAAGGGAGGAGGCCACTAGTCCAAAGAGA
ACTGTGGAGGCAAGGCCACACACGTAGAGAATGGCAATTTGTCCCTCCAGGAAGTGGTAA
TGCTGATAGAGTTTGTAGAGGTAGGGGGCCTGGAGCCAGTCCGCTGCCAGGGCCAGGAAG
TAGACCTGATAGAAGTCCAGTTGAAATCGAAGGAAGGAGGGATTGCTGCAAGCCCTTCCA
GAGGGCTTAGCCCGGCATCTTGACAGCTCCAATCCCAGACAGGAGGCCAGAAGGACCACA
AAGGCAAGATAGGCAGTCACCAGCATGGCCGGCCCCCGGACGACCTGCTGCCCCGTCTGC
GGGGACGCTCCGGACACGTCCGGCTCCAGGCCGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAAGTGTTTATTTTTAGGTGGAAAAGGGGAAGGGAGTAACACAGAGGCAACTTTTGG
CATCTTTTTTCCAGGCCATCACCCCATGTGCTCCCCAACCCAAAGCACTGGCAGGAGGGC
CCCCAGGACAGGCTGAGGGGCCAGATAGTCACACGGTCAGTCAGAGAGATCTGTACAACC
CTGGAGGGCCGGGATTCAAGGGTCCGTCCCAGCTCCCTTGTCCTGGAACAGGGTTAGAGC
TCAGGGGCATAGGGCTCCCCGGTGGGTGAGGGCACCCGCAGCTCAGCATCGTGCCTCACC
ACGGTGAAGAGCCCCACCACCGCCAGCAGAGCCATCACCATAACAGCCGAGCAGATGCTG
AACATGTTCCGAGTGCCTGTTTTGCGATCGCTGTCATGGAGGACCAGGAGCCCCAGGCAG
GCCAGTAAGTGCAGGGGCACCCGGAACCAGTTGAGCACACCCGTTTGCTCTGTGTCAGGG
ATCACCTTTCTCCGCAGGAAGCTCATGCTGGGAAAATACAGCCCACAGGCCAGTTCGATG
AGGAGGAAGGCGATGAAGGACTCCACTGGACTCTCCTGGCCTGGGCTGGTGGAGAAAGTC
AACATGAAGAGGGAGAAGACGACGATGAGCACGGCAAAGGAGAGAAGGTGCATAGGCTGT
AGGTGGTACCTCTTGGAGGTAGCGATGCGGTACAGGGACGAGCCGAGCAGGCTGGCTGCC
ATGAAGCTGGAGAAGATGATGCCCAGCGGGGCCCCGTGTGGGTCCAGCACAGGCGTCCAG
AGGAAGACGAAGATGAAGATGACACTCTCGAACAGGGCCTGGATGGTGCCTAGCAGCAGC
ACACGACGGTCCGACAGGAGGCAGCGTAGGCCTCCAGCACAGGTCCTTGAGAAGGCACGC
TGCCGATCATAGTTTTCTCCCCAGCTGTGAAGGGCCAAGGCCCCAGCCAGAGCCAAGAGC
GGGATGGCGGCCACGAAGGGCGCTACGGGCCCCAGGCCCATCCAGCAGGCCACGGCCTCA
GCTGCCACACCTGCCATGACAGCCAGCACGTGGTTCCAGAAGGCAGCTCGGGCGAAGGTA
GCTGGGATCCACTCAGCAGGGAAGTCATGCCGTTCCACATGCTCATGGATGTACCAGGCC
TCAAAGGCCGAGAAGAGCAGGGCTGTGGACAGCCCACCAAGTGCTCGGCCTACCAGCAGC
ACAAAGTAATCCTGGGAGAGTTTGGTTAAGCAGCAGAGAGAGTAAGTGAGGGAGAAGAGG
ACACAAGACTTCTTGCGACCCAGCCAATCCACAAGGGAGGAGGCCACTAGTCCAAAGAGA
ACTGTGGAGGCAAGGCCACACACGTAGAGAATGGCAATTTGTCCCTCCAGGAAGTGGTAA
TGCTGATAGAGTTTGTAGAGGTAGGGGGCCTGGAGCCAGTCCGCTGCCAGGGCCAGGAAG
TAGACCTGATAGAAGTCCAGTTGAAATCGAAGGAAGGAGGGATTGCTGCAAGCCCTTCCA
GAGGGCTTAGCCCGGCATCTTGACAGCTCCAATCCCAGACAGGAGGCCAGAAGGACCACA
AAGGCAAGATAGGCAGTCACCAGCATGGCCGGCCCCCGGACGACCTGCTGCCCCGTCTGC
GGGGACGCTCCGGACACGTCCGGCTCCAGGCCGCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6N075_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6N075_HUMAN

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               119-278, - strand, RNAz p=0.993481
               

               
               479-598, - strand, RNAz p=0.757226
               

               
               679-798, - strand, RNAz p=0.782387
               

               
               1079-1238, - strand, RNAz p=0.92147
               

               
               1279-1518, + strand, RNAz p=0.945981

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-278, - strand, RNAz p=0.993481
               

               
               479-598, - strand, RNAz p=0.757226
               

               
               679-798, - strand, RNAz p=0.782387
               

               
               1079-1238, - strand, RNAz p=0.92147
               

               
               1279-1518, + strand, RNAz p=0.945981

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1607, gnl|bosTau2|chr5 (19169635-19171236)
               

               
               4-1607, gnl|Hg17|chr12 (51934447-51932866)
               

               
               4-1607, gnl|Mm7|chr15 (102267895-102266331)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1607, gnl|bosTau2|chr5 (19169635-19171236)
               

               
               4-1607, gnl|Hg17|chr12 (51934447-51932866)
               

               
               4-1607, gnl|Mm7|chr15 (102267895-102266331)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               duo (0.345602)
               

               
               jej (0.296765)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               jej (0.296765)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	119-278, - strand, RNAz p=0.993481
	479-598, - strand, RNAz p=0.757226
	679-798, - strand, RNAz p=0.782387
	1079-1238, - strand, RNAz p=0.92147
	1279-1518, + strand, RNAz p=0.945981

	4-1607, gnl\|bosTau2\|chr5 (19169635-19171236)
	4-1607, gnl\|Hg17\|chr12 (51934447-51932866)
	4-1607, gnl\|Mm7\|chr15 (102267895-102266331)

	duo (0.345602)
	jej (0.296765)
	cag (0.151194)
	lnt (0.142308)
	hlv (0.139256)
	nmm (0.132802)
	eru (0.120048)
	ecc (0.115035)
	cty (0.10408)
	eje (0.0988338)