Ss1.1-Pig4-TMW8066B16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCATAAGGTCTGTGGAGGAAAAGTACTTCAGCTCTTCCAGCCTAATGAACTACAAGCA ATGGTTATTGGAAATACAAATTATGACTGGAAGGAATTGGAAAAGAATACAGAATACAAA GGAGAATATTGGGCAGAACATCCTACAATAAAAATGTTTTGGGAAGTATTTCACGAATTA CCATTGGAAAAGAAAAAACAATTTTTGTTATTTCTGACAGGTAGTGATCGCATTCCTATT CTTGGTATGAAGAGTCTAATACTAGTCATCCAGTCAACAGGAGGTGGTGAGGAATATCTT CCAGTTTCCCATACCTGTTTTAATCTTCTGGATCTTCCAAAATATACAGACAAAGAAACT CTCCGCTCTAAACTGATCCAAGCTATTGATCACAATGAAGGCTTCAGTTTAATATAACTT TGGAGTTATAACTAGTTTACTGCAAAAGCATTAAACTAATTGTTTGTGTTTTTTCTTGTG GTGATGAATTCAGCAAGGTGACAGAGGTACTATTACAGTTCTTACTTGCAAAATGTTTGA TGCAATGAGTATTCATGAAAGCCAAAAAATATTAAAGGAAACGAACAAAAACTGTTGATA ATTAAACCTACTGTACAGAACTATGGTTTTTTTTTTTTTGCCATCTTCCAATAAACATAC AAGTATTGTGAATACATTGAAGTTTTACTAACATGAATTTTAAGAGTTTGCTATTTCACA AATGATTTGGTGTGTGAGTGCATGAAAATGTTGCTTAATTTTTCTTCAATCACTGGGTGA AAAACCTTTAACTTTGGCCTGCAATAGTCATTCGATTATTTTTTCATTTTGTAAATAATG TTAAGTTTTGTAATAAAATAGTTATGCTCTCATACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCATAAGGTCTGTGGAGGAAAAGTACTTCAGCTCTTCCAGCCTAATGAACTACAAGCA ATGGTTATTGGAAATACAAATTATGACTGGAAGGAATTGGAAAAGAATACAGAATACAAA GGAGAATATTGGGCAGAACATCCTACAATAAAAATGTTTTGGGAAGTATTTCACGAATTA CCATTGGAAAAGAAAAAACAATTTTTGTTATTTCTGACAGGTAGTGATCGCATTCCTATT CTTGGTATGAAGAGTCTAATACTAGTCATCCAGTCAACAGGAGGTGGTGAGGAATATCTT CCAGTTTCCCATACCTGTTTTAATCTTCTGGATCTTCCAAAATATACAGACAAAGAAACT CTCCGCTCTAAACTGATCCAAGCTATTGATCACAATGAAGGCTTCAGTTTAATATAACTT TGGAGTTATAACTAGTTTACTGCAAAAGCATTAAACTAATTGTTTGTGTTTTTTCTTGTG GTGATGAATTCAGCAAGGTGACAGAGGTACTATTACAGTTCTTACTTGCAAAATGTTTGA TGCAATGAGTATTCATGAAAGCCAAAAAATATTAAAGGAAACGAACAAAAACTGTTGATA ATTAAACCTACTGTACAGAACTATGGTTTTTTTTTTTTTGCCATCTTCCAATAAACATAC AAGTATTGTGAATACATTGAAGTTTTACTAACATGAATTTTAAGAGTTTGCTATTTCACA AATGATTTGGTGTGTGAGTGCATGAAAATGTTGCTTAATTTTTCTTCAATCACTGGGTGA AAAACCTTTAACTTTGGCCTGCAATAGTCATTCGATTATTTTTTCATTTTGTAAATAATG TTAAGTTTTGTAATAAAATAGTTATGCTCTCATACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 209-367, - strand, RNAz p=0.910136 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 209-367, - strand, RNAz p=0.910136 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 104-208, gnl|bosTau2|chr28 (17265074-17265178) | |
| 104-208, gnl|canFam2|chr4 (22431886-22432039) | |
| 104-208, gnl|danRer3|chr18 (474945-474812) | |
| 104-208, gnl|dasNov1|scaffold_164066 (513-356) | |
| 104-208, gnl|echTel1|scaffold_159974 (1178-1023) | |
| 104-208, gnl|fr1|chrUn (200020206-200020326) | |
| 104-208, gnl|galGal2|chr6 (9736376-9736531) | |
| 104-208, gnl|hg17|chr10 (69354828-69354985) | |
| 104-208, gnl|Hg17|chr10 (69354952-69354848) | |
| 104-208, gnl|loxAfr1|scaffold_749 (131270-131425) | |
| 104-208, gnl|mm7|chr10 (62835598-62835455) | |
| 104-208, gnl|Mm7|chr10 (62835485-62835589) | |
| 104-208, gnl|monDom2|scaffold_67 (9047878-9048013) | |
| 104-208, gnl|oryCun1|scaffold_205206 (155175-155278) | |
| 104-208, gnl|panTro1|chr8 (70378244-70378401) | |
| 104-208, gnl|rheMac2|chr9 (69328552-69328395) | |
| 104-208, gnl|rn3|chr20 (25678648-25678504) | |
| 104-208, gnl|tetNig1|chr17 (985452-985576) | |
| 104-208, gnl|xenTro1|scaffold_228 (968134-968255) | |
| 209-876, gnl|bosTau2|chr28 (17265941-17266608) | |
| 209-876, gnl|Hg17|chr10 (69352902-69352248) | |
| 209-876, gnl|Mm7|chr10 (62836067-62836668) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 104-208, gnl|bosTau2|chr28 (17265074-17265178) | |
| 104-208, gnl|canFam2|chr4 (22431886-22432039) | |
| 104-208, gnl|danRer3|chr18 (474945-474812) | |
| 104-208, gnl|dasNov1|scaffold_164066 (513-356) | |
| 104-208, gnl|echTel1|scaffold_159974 (1178-1023) | |
| 104-208, gnl|fr1|chrUn (200020206-200020326) | |
| 104-208, gnl|galGal2|chr6 (9736376-9736531) | |
| 104-208, gnl|hg17|chr10 (69354828-69354985) | |
| 104-208, gnl|Hg17|chr10 (69354952-69354848) | |
| 104-208, gnl|loxAfr1|scaffold_749 (131270-131425) | |
| 104-208, gnl|mm7|chr10 (62835598-62835455) | |
| 104-208, gnl|Mm7|chr10 (62835485-62835589) | |
| 104-208, gnl|monDom2|scaffold_67 (9047878-9048013) | |
| 104-208, gnl|oryCun1|scaffold_205206 (155175-155278) | |
| 104-208, gnl|panTro1|chr8 (70378244-70378401) | |
| 104-208, gnl|rheMac2|chr9 (69328552-69328395) | |
| 104-208, gnl|rn3|chr20 (25678648-25678504) | |
| 104-208, gnl|tetNig1|chr17 (985452-985576) | |
| 104-208, gnl|xenTro1|scaffold_228 (968134-968255) | |
| 209-876, gnl|bosTau2|chr28 (17265941-17266608) | |
| 209-876, gnl|Hg17|chr10 (69352902-69352248) | |
| 209-876, gnl|Mm7|chr10 (62836067-62836668) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| tes (0.415628) | |
| gul (0.177588) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| sug (0.127291) | |
| tra (0.123092) | |
| jej (0.0989218) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| gul (0.177588) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| sug (0.127291) | |
| tra (0.123092) | |
| jej (0.0989218) |