Ss1.1-Pig4-TMW8066C16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAAGTAAGGCACTAACCTATGACCAGGCTAAGGCTGATTCTCACAGAGCCAAAAAGGAT ATCAAACTGGGCCCCTTTGATGTTGCCCGAAAGGTGTTTGTAACTGGAGAGGAGACTGCT CATATGTCACTTATGGACAAGTCGGATCTCTTTTTCCATGATTATTCAATAGCACCACTC TTTGTCCAGGAGAACTACATTCACGTGAAGCCTGTAGCTGCAGGAGGTGACATGAAAAAG CACCTGATGCTTTTAAGCAGAGCAGCAGACAGCATTTGTGATGGTGACCTAGTGGACCGT CAGATCCGCAATAAGCAAAACTGGAGCCTTCTGCCCACACAGGCCATTTATGCCAGTGTT CTTCCCGGAGAGTTAATGAGGGGGTACATGACCCAGTTTCCCTCCTTCCCAAGCTGGTTG GGGAAGCACTCATCTGCGGGCAAACACGATCGTATTGTTCAGGACCTAGCATTGCATATG AGTCTCAGAACTTACTCCAGCAAAAGGACTGTAAACATGGATTATCTGTCACATATAAGG GATGCACTTGTACAGCCCTTGACCTCACAAGGGGTGGAAGGAGTACAAGATGCTGTTGCT CTTATGGACACATATTATTTGATGAAAGAAGACTTTGAGAATATTATGGAAATTAGCAGC TGGGGAGGCAGACCTAGTCCTTTCTCCAAGCTGGATCCCAAGGTGAAAGCAGCCTTCACA AGAGCTTACAATAAGGAAGCCCACCTTACTCCGTATTCACTGCAGGCAGTAAAGACACAC AGACACAGCACAGGTCCAGTGCTGGATTCTGAATACAACGAAGAGTTAAATGAAGATGAC TCTCAATCTGATGAGAAAGACCAGGACACTTTAGAAAGTGATGCTATGATCAAGAAAAAG CCGAAACCTTCAAAATCAGAAAAAGATAAGGAGTCCAGAAAAGGAAAAGGGAAAAGTTCA AAGAAATGAAACTGTTTTTGACTGCTGACAGCCACTTTTTACTCACCCTGCTGACCAGTC TAGCTGGTCTAGAGAATGCCTTGTTTTTCCATAGGAACCATGTTGTAGTGTAATGGGGCA ACCTCATGGTCCCGTTACAAATCAACAGTGGTGCAGCTAGAAGGATGCAAGCAGTAGGCT GGTATGCACCTCTTATAGAGGTTGATAGGACTCCTTGGGTCCTCCACTATCCCTTGTCAA TCCAATGAGATTGTACTTCAAAATGACTGTATAATCAGAATTTGGAGTCAGATTTTAGTT AATGGTAATATGTCTGGGAACAGAGGTACTAAGGTGGCTTTTGTAGGCTTAAGAATTTAT CCTAATGGCCATTATAGGACCAATGCTGATTTTCTTAAAAAGGGTAGTTAACTATTATGT GGTGAAATTTTGTAAATAAATTATAATACAAAACAGTCACCACCTAGAGCTGGATATTCT TTGTACATTGTCAGATATCTTACAAAATATAAATTAGGAATAACAATATTCCACAATACA TGTACAGATTCTTAAGATTGTCATCTTATACGGTAAAATATTATGTCGGTATATTTTTTC CTTATTAATTTGCAAATGATTGGATAAAAAAACTAAGTATATTCTTACTAACCTTTGTGT GAAACATAACTTTGGCAATTGACGAGTCAGAACTCTCATTTGCCGCTTCATTGCCGCATG AGGGTCAGCCACACCTCTGCTGCGAATAGAATTTCATGGAGAGGCCTCCTTGTTACTACT AGAAGGTGTTGTGGCTGCAGAAAGATTGTCATACATTCCTATCCTTCCAGAGTCTCAACC CATCAGTTTCAAACCAGCAGGGTGTAGGCTGGGTCAGACTTTCTCCTCACTCTGCTTTGG GACAAAATTAACACTGGCTTTTGTTTACTTTGTCTCTGGGAGAGCCAGTTCTGTCCTGAT AAGAGTCCACAGACCTTACTGGAACTTTAGATTATGCCTGTAAGTGTGCTTGTTGAGGGG CCCTGAGGCTGTGGAACTAACTTGGAATTTGAGTGTCTAGTGATTTTTTTTAATCTTGTC AGTGAATGCTCAGGGGTATGTGCTCCTTCTCTGAGCTAAGTGCTAAAAGGAATGTAAAAT CAGGATTCTGTTCCCTGCTTTTAAGGAACTGATAGTTTTATTTGGGAAGTCAAAGTTGAG ATTTTTCCCCCACCTTTTTGGGCCACCTCATGGCATATGGAGTTCCCAGGCCAGGGTTCA GATCTGAGCCACAGCCGCAGTTTTGGCAATGCTGGATCCTTAGTGTGGTGGGCCAGGGAT CAAACCTGCGTCCTAGCACTGCTGATCCCATTGTGCCACAGAGGGAACTCCAAGATACTT AAAGTGTATTTACGAATGTGAAAAATGTCTTTCTTGTAGATTAAGTTCGTTATGGGAATA AAACATTGCCTTATAAGCCTTTGCCTACTAAGCCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAAGTAAGGCACTAACCTATGACCAGGCTAAGGCTGATTCTCACAGAGCCAAAAAGGAT ATCAAACTGGGCCCCTTTGATGTTGCCCGAAAGGTGTTTGTAACTGGAGAGGAGACTGCT CATATGTCACTTATGGACAAGTCGGATCTCTTTTTCCATGATTATTCAATAGCACCACTC TTTGTCCAGGAGAACTACATTCACGTGAAGCCTGTAGCTGCAGGAGGTGACATGAAAAAG CACCTGATGCTTTTAAGCAGAGCAGCAGACAGCATTTGTGATGGTGACCTAGTGGACCGT CAGATCCGCAATAAGCAAAACTGGAGCCTTCTGCCCACACAGGCCATTTATGCCAGTGTT CTTCCCGGAGAGTTAATGAGGGGGTACATGACCCAGTTTCCCTCCTTCCCAAGCTGGTTG GGGAAGCACTCATCTGCGGGCAAACACGATCGTATTGTTCAGGACCTAGCATTGCATATG AGTCTCAGAACTTACTCCAGCAAAAGGACTGTAAACATGGATTATCTGTCACATATAAGG GATGCACTTGTACAGCCCTTGACCTCACAAGGGGTGGAAGGAGTACAAGATGCTGTTGCT CTTATGGACACATATTATTTGATGAAAGAAGACTTTGAGAATATTATGGAAATTAGCAGC TGGGGAGGCAGACCTAGTCCTTTCTCCAAGCTGGATCCCAAGGTGAAAGCAGCCTTCACA AGAGCTTACAATAAGGAAGCCCACCTTACTCCGTATTCACTGCAGGCAGTAAAGACACAC AGACACAGCACAGGTCCAGTGCTGGATTCTGAATACAACGAAGAGTTAAATGAAGATGAC TCTCAATCTGATGAGAAAGACCAGGACACTTTAGAAAGTGATGCTATGATCAAGAAAAAG CCGAAACCTTCAAAATCAGAAAAAGATAAGGAGTCCAGAAAAGGAAAAGGGAAAAGTTCA AAGAAATGAAACTGTTTTTGACTGCTGACAGCCACTTTTTACTCACCCTGCTGACCAGTC TAGCTGGTCTAGAGAATGCCTTGTTTTTCCATAGGAACCATGTTGTAGTGTAATGGGGCA ACCTCATGGTCCCGTTACAAATCAACAGTGGTGCAGCTAGAAGGATGCAAGCAGTAGGCT GGTATGCACCTCTTATAGAGGTTGATAGGACTCCTTGGGTCCTCCACTATCCCTTGTCAA TCCAATGAGATTGTACTTCAAAATGACTGTATAATCAGAATTTGGAGTCAGATTTTAGTT AATGGTAATATGTCTGGGAACAGAGGTACTAAGGTGGCTTTTGTAGGCTTAAGAATTTAT CCTAATGGCCATTATAGGACCAATGCTGATTTTCTTAAAAAGGGTAGTTAACTATTATGT GGTGAAATTTTGTAAATAAATTATAATACAAAACAGTCACCACCTAGAGCTGGATATTCT TTGTACATTGTCAGATATCTTACAAAATATAAATTAGGAATAACAATATTCCACAATACA TGTACAGATTCTTAAGATTGTCATCTTATACGGTAAAATATTATGTCGGTATATTTTTTC CTTATTAATTTGCAAATGATTGGATAAAAAAACTAAGTATATTCTTACTAACCTTTGTGT GAAACATAACTTTGGCAATTGACGAGTCAGAACTCTCATTTGCCGCTTCATTGCCGCATG AGGGTCAGCCACACCTCTGCTGCGAATAGAATTTCATGGAGAGGCCTCCTTGTTACTACT AGAAGGTGTTGTGGCTGCAGAAAGATTGTCATACATTCCTATCCTTCCAGAGTCTCAACC CATCAGTTTCAAACCAGCAGGGTGTAGGCTGGGTCAGACTTTCTCCTCACTCTGCTTTGG GACAAAATTAACACTGGCTTTTGTTTACTTTGTCTCTGGGAGAGCCAGTTCTGTCCTGAT AAGAGTCCACAGACCTTACTGGAACTTTAGATTATGCCTGTAAGTGTGCTTGTTGAGGGG CCCTGAGGCTGTGGAACTAACTTGGAATTTGAGTGTCTAGTGATTTTTTTTAATCTTGTC AGTGAATGCTCAGGGGTATGTGCTCCTTCTCTGAGCTAAGTGCTAAAAGGAATGTAAAAT CAGGATTCTGTTCCCTGCTTTTAAGGAACTGATAGTTTTATTTGGGAAGTCAAAGTTGAG ATTTTTCCCCCACCTTTTTGGGCCACCTCATGGCATATGGAGTTCCCAGGCCAGGGTTCA GATCTGAGCCACAGCCGCAGTTTTGGCAATGCTGGATCCTTAGTGTGGTGGGCCAGGGAT CAAACCTGCGTCCTAGCACTGCTGATCCCATTGTGCCACAGAGGGAACTCCAAGATACTT AAAGTGTATTTACGAATGTGAAAAATGTCTTTCTTGTAGATTAAGTTCGTTATGGGAATA AAACATTGCCTTATAAGCCTTTGCCTACTAAGCCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1023-1211, - strand, RNAz p=0.960287 | |
| 1310-1426, - strand, RNAz p=0.748961 | |
| 1810-1924, - strand, RNAz p=0.806973 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1023-1211, - strand, RNAz p=0.960287 | |
| 1310-1426, - strand, RNAz p=0.748961 | |
| 1810-1924, - strand, RNAz p=0.806973 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 69-224, gnl|bosTau2|chr6 (32084717-32084562) | |
| 69-224, gnl|canFam2|chr3 (75952309-75952131) | |
| 69-224, gnl|danRer3|chr1 (21441756-21441577) | |
| 69-224, gnl|dasNov1|scaffold_5400 (13060-12879) | |
| 69-224, gnl|echTel1|scaffold_316249 (66853-66679) | |
| 69-224, gnl|fr1|chrUn (233989369-233989527) | |
| 69-224, gnl|galGal2|chr4 (69702037-69702221) | |
| 69-224, gnl|hg17|chr4 (39124439-39124640) | |
| 69-224, gnl|Hg17|chr4 (39124601-39124446) | |
| 69-224, gnl|mm7|chr5 (64627182-64627373) | |
| 69-224, gnl|Mm7|chr5 (64627344-64627189) | |
| 69-224, gnl|monDom2|scaffold_26 (4421975-4422174) | |
| 69-224, gnl|oryCun1|scaffold_191130 (4005-4206) | |
| 69-224, gnl|panTro1|chr3 (41810865-41811066) | |
| 69-224, gnl|rheMac2|chr5 (34262737-34262938) | |
| 69-224, gnl|rn3|chr14 (45733648-45733457) | |
| 69-224, gnl|tetNig1|chrUn_random (51259539-51259698) | |
| 69-224, gnl|xenTro1|scaffold_84 (2135294-2135121) | |
| 487-707, gnl|bosTau2|chr6 (32080943-32080723) | |
| 487-707, gnl|canFam2|chr3 (75957778-75957541) | |
| 487-707, gnl|danRer3|chr1 (21443801-21443569) | |
| 487-707, gnl|dasNov1|scaffold_84489 (8797-8568) | |
| 487-707, gnl|echTel1|scaffold_316249 (78263-78026) | |
| 487-707, gnl|fr1|chrUn (233988677-233988887) | |
| 487-707, gnl|galGal2|chr4 (69700620-69700855) | |
| 487-707, gnl|hg17|chr4 (39115820-39116057) | |
| 487-707, gnl|Hg17|chr4 (39116040-39115820) | |
| 487-707, gnl|loxAfr1|scaffold_16015 (12704-12467) | |
| 487-707, gnl|mm7|chr5 (64620908-64621134) | |
| 487-707, gnl|Mm7|chr5 (64621128-64620908) | |
| 487-707, gnl|monDom2|scaffold_26 (4415406-4415641) | |
| 487-707, gnl|oryCun1|scaffold_199568 (34556-34319) | |
| 487-707, gnl|panTro1|chr3 (41803724-41803961) | |
| 487-707, gnl|rheMac2|chr5 (34257331-34257568) | |
| 487-707, gnl|rn3|chr14 (45739583-45739348) | |
| 487-707, gnl|tetNig1|chrUn_random (51258732-51258961) | |
| 487-707, gnl|xenTro1|scaffold_84 (2139738-2139507) | |
| 904-2136, gnl|bosTau2|chr6 (32078283-32077036) | |
| 904-2136, gnl|Hg17|chr4 (39113012-39111758) | |
| 904-2136, gnl|Mm7|chr5 (64617939-64616782) | |
| 2333-2436, gnl|bosTau2|chr6 (32077003-32076902) | |
| 2333-2436, gnl|canFam2|chr3 (75961835-75961211) | |
| 2333-2436, gnl|dasNov1|scaffold_154333 (1955-2530) | |
| 2333-2436, gnl|echTel1|scaffold_316249 (82379-81841) | |
| 2333-2436, gnl|hg17|chr4 (39111405-39112041) | |
| 2333-2436, gnl|Hg17|chr4 (39111728-39111629) | |
| 2333-2436, gnl|loxAfr1|scaffold_16015 (17265-16627) | |
| 2333-2436, gnl|mm7|chr5 (64616446-64617014) | |
| 2333-2436, gnl|Mm7|chr5 (64616752-64616649) | |
| 2333-2436, gnl|oryCun1|scaffold_199568 (38764-38178) | |
| 2333-2436, gnl|panTro1|chr3 (41799308-41799944) | |
| 2333-2436, gnl|rheMac2|chr5 (34252954-34253590) | |
| 2333-2436, gnl|rn3|chr14 (45744000-45743449) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-224, gnl|bosTau2|chr6 (32084717-32084562) | |
| 69-224, gnl|canFam2|chr3 (75952309-75952131) | |
| 69-224, gnl|danRer3|chr1 (21441756-21441577) | |
| 69-224, gnl|dasNov1|scaffold_5400 (13060-12879) | |
| 69-224, gnl|echTel1|scaffold_316249 (66853-66679) | |
| 69-224, gnl|fr1|chrUn (233989369-233989527) | |
| 69-224, gnl|galGal2|chr4 (69702037-69702221) | |
| 69-224, gnl|hg17|chr4 (39124439-39124640) | |
| 69-224, gnl|Hg17|chr4 (39124601-39124446) | |
| 69-224, gnl|mm7|chr5 (64627182-64627373) | |
| 69-224, gnl|Mm7|chr5 (64627344-64627189) | |
| 69-224, gnl|monDom2|scaffold_26 (4421975-4422174) | |
| 69-224, gnl|oryCun1|scaffold_191130 (4005-4206) | |
| 69-224, gnl|panTro1|chr3 (41810865-41811066) | |
| 69-224, gnl|rheMac2|chr5 (34262737-34262938) | |
| 69-224, gnl|rn3|chr14 (45733648-45733457) | |
| 69-224, gnl|tetNig1|chrUn_random (51259539-51259698) | |
| 69-224, gnl|xenTro1|scaffold_84 (2135294-2135121) | |
| 487-707, gnl|bosTau2|chr6 (32080943-32080723) | |
| 487-707, gnl|canFam2|chr3 (75957778-75957541) | |
| 487-707, gnl|danRer3|chr1 (21443801-21443569) | |
| 487-707, gnl|dasNov1|scaffold_84489 (8797-8568) | |
| 487-707, gnl|echTel1|scaffold_316249 (78263-78026) | |
| 487-707, gnl|fr1|chrUn (233988677-233988887) | |
| 487-707, gnl|galGal2|chr4 (69700620-69700855) | |
| 487-707, gnl|hg17|chr4 (39115820-39116057) | |
| 487-707, gnl|Hg17|chr4 (39116040-39115820) | |
| 487-707, gnl|loxAfr1|scaffold_16015 (12704-12467) | |
| 487-707, gnl|mm7|chr5 (64620908-64621134) | |
| 487-707, gnl|Mm7|chr5 (64621128-64620908) | |
| 487-707, gnl|monDom2|scaffold_26 (4415406-4415641) | |
| 487-707, gnl|oryCun1|scaffold_199568 (34556-34319) | |
| 487-707, gnl|panTro1|chr3 (41803724-41803961) | |
| 487-707, gnl|rheMac2|chr5 (34257331-34257568) | |
| 487-707, gnl|rn3|chr14 (45739583-45739348) | |
| 487-707, gnl|tetNig1|chrUn_random (51258732-51258961) | |
| 487-707, gnl|xenTro1|scaffold_84 (2139738-2139507) | |
| 904-2136, gnl|bosTau2|chr6 (32078283-32077036) | |
| 904-2136, gnl|Hg17|chr4 (39113012-39111758) | |
| 904-2136, gnl|Mm7|chr5 (64617939-64616782) | |
| 2333-2436, gnl|bosTau2|chr6 (32077003-32076902) | |
| 2333-2436, gnl|canFam2|chr3 (75961835-75961211) | |
| 2333-2436, gnl|dasNov1|scaffold_154333 (1955-2530) | |
| 2333-2436, gnl|echTel1|scaffold_316249 (82379-81841) | |
| 2333-2436, gnl|hg17|chr4 (39111405-39112041) | |
| 2333-2436, gnl|Hg17|chr4 (39111728-39111629) | |
| 2333-2436, gnl|loxAfr1|scaffold_16015 (17265-16627) | |
| 2333-2436, gnl|mm7|chr5 (64616446-64617014) | |
| 2333-2436, gnl|Mm7|chr5 (64616752-64616649) | |
| 2333-2436, gnl|oryCun1|scaffold_199568 (38764-38178) | |
| 2333-2436, gnl|panTro1|chr3 (41799308-41799944) | |
| 2333-2436, gnl|rheMac2|chr5 (34252954-34253590) | |
| 2333-2436, gnl|rn3|chr14 (45744000-45743449) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ill (0.351185) | |
| cbl (0.344392) | |
| cut (0.169924) | |
| eli (0.151814) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| cbl (0.344392) | |
| cut (0.169924) | |
| eli (0.151814) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |