Non-Coding RNA Search

Ss1.1-Pig4-TMW8066C24.3

Sequence:


               
               CTGGGGCCCGGGCAGAGACAGCATTGAGAGACCGAGAGTCCGGGAGGCACAGACCAGCGG
CGAGCCCTGCATTTTCAGGAACCCGTCCTGCTTGGAGGCAGTGTTCTCTTCGGCTTAATC
CAGCCCGGGTCCCCGGGTGGGGGTGGAGGGTGCAGAGGAATCCAAAGGAGTGTCATCTGC
CAGGCTCACGGAGAGGAGAAACTGCGAAGTAAATGCTTAGACCCCCAGGGGCAAGGGTCT
GAGCCACTGCCGTGCCGCCCACAAACTGATTTCTGAAGGGGAATAACCCCAACAGGGCGC
AAGCCTCACTATTACTTGAACTTTCCAAAACCTAGAGAGGAAAAGTGCAATGTATGTTGT
ATATAAAGAGGTAACTATCAATATTTAAGTTTGTTGCTGTCAAGATTTTTTTTTGTAACT
TCAAATATAGAGATATTTTTGTACGTTATATATTGTATTAAGGGCATTTTAAAACAATTG
TATTGTTCCCCTCCCCTCTATTTTAATATGTGAATGTCTCAGCGAGGTGTAACATTGTTT
GCTGCGCGAAATGTGAGAGTGTGTGTGTGTGTGTGCGTGAAAGAGAGTCTGGATGCCTCT
TGGGGAAGAAGAAAACACCATATCTGTATAATCTATTTACATAAAATGGGTGATATGCGA
AGTAGCAAACCAATAAACTGTCTCAATGATGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGCCCGGGCAGAGACAGCATTGAGAGACCGAGAGTCCGGGAGGCACAGACCAGCGG
CGAGCCCTGCATTTTCAGGAACCCGTCCTGCTTGGAGGCAGTGTTCTCTTCGGCTTAATC
CAGCCCGGGTCCCCGGGTGGGGGTGGAGGGTGCAGAGGAATCCAAAGGAGTGTCATCTGC
CAGGCTCACGGAGAGGAGAAACTGCGAAGTAAATGCTTAGACCCCCAGGGGCAAGGGTCT
GAGCCACTGCCGTGCCGCCCACAAACTGATTTCTGAAGGGGAATAACCCCAACAGGGCGC
AAGCCTCACTATTACTTGAACTTTCCAAAACCTAGAGAGGAAAAGTGCAATGTATGTTGT
ATATAAAGAGGTAACTATCAATATTTAAGTTTGTTGCTGTCAAGATTTTTTTTTGTAACT
TCAAATATAGAGATATTTTTGTACGTTATATATTGTATTAAGGGCATTTTAAAACAATTG
TATTGTTCCCCTCCCCTCTATTTTAATATGTGAATGTCTCAGCGAGGTGTAACATTGTTT
GCTGCGCGAAATGTGAGAGTGTGTGTGTGTGTGTGCGTGAAAGAGAGTCTGGATGCCTCT
TGGGGAAGAAGAAAACACCATATCTGTATAATCTATTTACATAAAATGGGTGATATGCGA
AGTAGCAAACCAATAAACTGTCTCAATGATGAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               184-692, gnl|bosTau2|chr15 (28077523-28077026)
               

               
               184-692, gnl|Hg17|chr11 (10285018-10285520)
               

               
               184-692, gnl|Mm7|chr7 (106544594-106545091)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-692, gnl|bosTau2|chr15 (28077523-28077026)
               

               
               184-692, gnl|Hg17|chr11 (10285018-10285520)
               

               
               184-692, gnl|Mm7|chr7 (106544594-106545091)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cki (0.660939)
               

               
               amn (0.417711)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.660939)
               

               
               amn (0.417711)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	184-692, gnl\|bosTau2\|chr15 (28077523-28077026)
	184-692, gnl\|Hg17\|chr11 (10285018-10285520)
	184-692, gnl\|Mm7\|chr7 (106544594-106545091)

	cki (0.660939)
	amn (0.417711)
	hea (0.204499)
	rec (0.17307)
	spl (0.143184)
	hlv (0.139256)
	pla (0.133672)
	kid (0.129735)
	sug (0.127291)