Ss1.1-Pig4-TMW8066D03.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TTTCAAGGCAGAGAAGTATAGCCCCGATTTCTGCAGCACACCCGCCTGCACCAAGGAAAA AGAGGAATGCTACACTGGGAAAGGGTTGGACTACCGCGGCACCCGCAGCCTCACCATGTC TGGGGCCTTCTGCCTCCCATGGAATTCCTTGGTCCTGATGGGCAAAATTTACACAGCCTG GAACAGCAACGCACAGACTCTGGGCCTGGGCAAGCACAACTACTGCAGGAATCCAGATGG GGACACCCAGCCTTGGTGCCACGTGCTGAAGGACCATAAGCTGACCTGGGAGTACTGTGA CCTGCCTCAGTGCGTCACCTGCGGCCTGAGACAGTACAAGGAGCCCCAGTTCCGCATCAA AGGAGGCCTCTATGCTGACATCACCTCGCACCCATGGCAGGCTGCCATCTTCGTCAAGAA CCGGAGGTCCCCAGGAGAGAGGTTTCTGTGTGGGGGGATCCTGATCAGCTCCTGCTGGGT GCTGTCAGCTGCTCACTGCTTCCAAGAGAGGTTCCCTCCCCACCACGTCAGGGTGGTCTT GGGCAGAACGTATAGGCTGGTCCCTGGAGAGGAGGAGCAGGCGTTTGAAGTGGAAAAATA CATCGTCCACAAGGAATTTGATGACGACACTTACGACAATGACATTGCTCTGCTGCAGCT GAAATCAGACTCGCTGACCTGCGCCCAGGAAAGTGATGCGGTCCGCACCGTCTGCCTCCC GGAGGCCAACCTGCAGCTGCCCGATTGGACGGAGTGCGAGCTGTCCGGCTACGGCAAGCA TGAAGCCTCTTCTCCTTTCTATTCTGAGCGGCTGAAGGAGGCTCATGTCCGGCTGTACCC ATCCAGCCGCTGCACTTCAAAACATTTGTTTAATAAAACCATCACCAACAATATGCTGTG TGCCGGGGACACACGAAGTGGTGGGGACAATGCAAACCTGCACGACGCCTGCCAGGGGGA CTCGGGCGGCCCCCTGGTGTGTATGAAGGGCAACCACATGACCTTGGTTGGCGTCATCAG CTGGGGCCTGGGCTGCGGGCAGAAGGACGTTCCGGGTGTGTACACCAAGGTCACAAATTA CCTGAACTGGATTCGAGACAACACGAGACCGTGACCGAGAACCTCACGGAGACGCTACTT CCTCCACCTTGGAGACGATGCGCCGAGGCGGGTGCTTCTTCCCGCCGCCCAGGCAGGGGG AAGGTGTTATCTTCGCAGGTACTTCCCATCTGAGAAGTTTTCAGGACTTAAGGTCTGAAA TGGACTCTGTCAGTCGGGGACAATGGATGAATGCCACCTGAACACCACCACCCAGCACAG AAGCCCACCTCCTGCTCTGTCAATGCCAGAAGCATTGGAAACGGGACCACAAAGATAAAA GTGTGTCTCAAGAGTCAAAGAGAACTTGATCCTTCAGGGAAGAAGGGTTGCATTAGAAAT AGAATGTCTATTTATAGTCACAGGAAGCTGGGGGCTCTTAGGGAGGGAGGGGCTGGCTGG CCAGATCAGACTCCTCAAATCCAGCCTTTAAATCAAGTGTCTGGCTTTCCTTTGCTCCAG CTCTTGGAAGGAAATCCTGTCGTGCACAGTGTAATTCTTTTTTCTTTATAAACATCATAA TAGAAGAGGAGACACATGTCATTTGAATAACTGAGAAACTAGGCTTCAGCTTATTTATAT CAATCCAGTCTCGTGTTTATTTACTATGTTGCCACAACCCTGAATGATATCTTACTGGAA TAATAAAGTCTGATATATTTTTCACATATTTTCCCA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TTTCAAGGCAGAGAAGTATAGCCCCGATTTCTGCAGCACACCCGCCTGCACCAAGGAAAA AGAGGAATGCTACACTGGGAAAGGGTTGGACTACCGCGGCACCCGCAGCCTCACCATGTC TGGGGCCTTCTGCCTCCCATGGAATTCCTTGGTCCTGATGGGCAAAATTTACACAGCCTG GAACAGCAACGCACAGACTCTGGGCCTGGGCAAGCACAACTACTGCAGGAATCCAGATGG GGACACCCAGCCTTGGTGCCACGTGCTGAAGGACCATAAGCTGACCTGGGAGTACTGTGA CCTGCCTCAGTGCGTCACCTGCGGCCTGAGACAGTACAAGGAGCCCCAGTTCCGCATCAA AGGAGGCCTCTATGCTGACATCACCTCGCACCCATGGCAGGCTGCCATCTTCGTCAAGAA CCGGAGGTCCCCAGGAGAGAGGTTTCTGTGTGGGGGGATCCTGATCAGCTCCTGCTGGGT GCTGTCAGCTGCTCACTGCTTCCAAGAGAGGTTCCCTCCCCACCACGTCAGGGTGGTCTT GGGCAGAACGTATAGGCTGGTCCCTGGAGAGGAGGAGCAGGCGTTTGAAGTGGAAAAATA CATCGTCCACAAGGAATTTGATGACGACACTTACGACAATGACATTGCTCTGCTGCAGCT GAAATCAGACTCGCTGACCTGCGCCCAGGAAAGTGATGCGGTCCGCACCGTCTGCCTCCC GGAGGCCAACCTGCAGCTGCCCGATTGGACGGAGTGCGAGCTGTCCGGCTACGGCAAGCA TGAAGCCTCTTCTCCTTTCTATTCTGAGCGGCTGAAGGAGGCTCATGTCCGGCTGTACCC ATCCAGCCGCTGCACTTCAAAACATTTGTTTAATAAAACCATCACCAACAATATGCTGTG TGCCGGGGACACACGAAGTGGTGGGGACAATGCAAACCTGCACGACGCCTGCCAGGGGGA CTCGGGCGGCCCCCTGGTGTGTATGAAGGGCAACCACATGACCTTGGTTGGCGTCATCAG CTGGGGCCTGGGCTGCGGGCAGAAGGACGTTCCGGGTGTGTACACCAAGGTCACAAATTA CCTGAACTGGATTCGAGACAACACGAGACCGTGACCGAGAACCTCACGGAGACGCTACTT CCTCCACCTTGGAGACGATGCGCCGAGGCGGGTGCTTCTTCCCGCCGCCCAGGCAGGGGG AAGGTGTTATCTTCGCAGGTACTTCCCATCTGAGAAGTTTTCAGGACTTAAGGTCTGAAA TGGACTCTGTCAGTCGGGGACAATGGATGAATGCCACCTGAACACCACCACCCAGCACAG AAGCCCACCTCCTGCTCTGTCAATGCCAGAAGCATTGGAAACGGGACCACAAAGATAAAA GTGTGTCTCAAGAGTCAAAGAGAACTTGATCCTTCAGGGAAGAAGGGTTGCATTAGAAAT AGAATGTCTATTTATAGTCACAGGAAGCTGGGGGCTCTTAGGGAGGGAGGGGCTGGCTGG CCAGATCAGACTCCTCAAATCCAGCCTTTAAATCAAGTGTCTGGCTTTCCTTTGCTCCAG CTCTTGGAAGGAAATCCTGTCGTGCACAGTGTAATTCTTTTTTCTTTATAAACATCATAA TAGAAGAGGAGACACATGTCATTTGAATAACTGAGAAACTAGGCTTCAGCTTATTTATAT CAATCCAGTCTCGTGTTTATTTACTATGTTGCCACAACCCTGAATGATATCTTACTGGAA TAATAAAGTCTGATATATTTTTCACATATTTTCCCA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
96-215, + strand, RNAz p=0.777979 | |
1360-1465, - strand, RNAz p=0.805256 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
96-215, + strand, RNAz p=0.777979 | |
1360-1465, - strand, RNAz p=0.805256 |
Aligned organism(s): 39 entry(ies) | More info |
Aligned organism(s): 39 entry(ies) | Help | Less info |
56-229, gnl|bosTau2|chr27 (23533963-23533790) | |
56-229, gnl|canFam2|chr16 (26444675-26444543) | |
56-229, gnl|danRer3|chr8 (5524012-5523893) | |
56-229, gnl|dasNov1|scaffold_11233 (6745-6612) | |
56-229, gnl|fr1|chrUn (1459606-1459474) | |
56-229, gnl|galGal2|chrUn (892621-892745) | |
56-229, gnl|hg17|chr8 (42159380-42159512) | |
56-229, gnl|Hg17|chr8 (42159566-42159393) | |
56-229, gnl|mm7|chr8 (21561072-21560940) | |
56-229, gnl|Mm7|chr8 (21560884-21561057) | |
56-229, gnl|monDom2|scaffold_1 (79864438-79864315) | |
56-229, gnl|oryCun1|scaffold_144369 (404-536) | |
56-229, gnl|panTro1|chr7 (43578084-43578216) | |
56-229, gnl|rheMac2|chr8 (42760503-42760635) | |
56-229, gnl|rn3|chr16 (73720737-73720869) | |
56-229, gnl|tetNig1|chr12 (6026352-6026236) | |
314-512, gnl|bosTau2|chr27 (23532877-23532679) | |
314-512, gnl|Hg17|chr8 (42157361-42157163) | |
314-512, gnl|Mm7|chr8 (21563419-21563617) | |
647-788, gnl|bosTau2|chr27 (23532316-23532175) | |
647-788, gnl|canFam2|chr16 (26447502-26447335) | |
647-788, gnl|dasNov1|scaffold_11233 (9592-9420) | |
647-788, gnl|echTel1|scaffold_244060 (8289-8118) | |
647-788, gnl|fr1|chrUn (1460715-1460553) | |
647-788, gnl|galGal2|chrUn (890762-890935) | |
647-788, gnl|hg17|chr8 (42156596-42156764) | |
647-788, gnl|Hg17|chr8 (42156742-42156601) | |
647-788, gnl|loxAfr1|scaffold_13553 (32144-31974) | |
647-788, gnl|mm7|chr8 (21564119-21563949) | |
647-788, gnl|Mm7|chr8 (21563971-21564112) | |
647-788, gnl|monDom2|scaffold_1 (79871810-79871635) | |
647-788, gnl|oryCun1|scaffold_184425 (103657-103836) | |
647-788, gnl|panTro1|chr7 (43575301-43575469) | |
647-788, gnl|rheMac2|chr8 (42757716-42757884) | |
647-788, gnl|rn3|chr16 (73717528-73717699) | |
647-788, gnl|tetNig1|chr12 (6019111-6018948) | |
953-1775, gnl|bosTau2|chr27 (23529331-23528484) | |
953-1775, gnl|Hg17|chr8 (42152829-42151907) | |
953-1775, gnl|Mm7|chr8 (21567262-21568166) |
Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
56-229, gnl|bosTau2|chr27 (23533963-23533790) | |
56-229, gnl|canFam2|chr16 (26444675-26444543) | |
56-229, gnl|danRer3|chr8 (5524012-5523893) | |
56-229, gnl|dasNov1|scaffold_11233 (6745-6612) | |
56-229, gnl|fr1|chrUn (1459606-1459474) | |
56-229, gnl|galGal2|chrUn (892621-892745) | |
56-229, gnl|hg17|chr8 (42159380-42159512) | |
56-229, gnl|Hg17|chr8 (42159566-42159393) | |
56-229, gnl|mm7|chr8 (21561072-21560940) | |
56-229, gnl|Mm7|chr8 (21560884-21561057) | |
56-229, gnl|monDom2|scaffold_1 (79864438-79864315) | |
56-229, gnl|oryCun1|scaffold_144369 (404-536) | |
56-229, gnl|panTro1|chr7 (43578084-43578216) | |
56-229, gnl|rheMac2|chr8 (42760503-42760635) | |
56-229, gnl|rn3|chr16 (73720737-73720869) | |
56-229, gnl|tetNig1|chr12 (6026352-6026236) | |
314-512, gnl|bosTau2|chr27 (23532877-23532679) | |
314-512, gnl|Hg17|chr8 (42157361-42157163) | |
314-512, gnl|Mm7|chr8 (21563419-21563617) | |
647-788, gnl|bosTau2|chr27 (23532316-23532175) | |
647-788, gnl|canFam2|chr16 (26447502-26447335) | |
647-788, gnl|dasNov1|scaffold_11233 (9592-9420) | |
647-788, gnl|echTel1|scaffold_244060 (8289-8118) | |
647-788, gnl|fr1|chrUn (1460715-1460553) | |
647-788, gnl|galGal2|chrUn (890762-890935) | |
647-788, gnl|hg17|chr8 (42156596-42156764) | |
647-788, gnl|Hg17|chr8 (42156742-42156601) | |
647-788, gnl|loxAfr1|scaffold_13553 (32144-31974) | |
647-788, gnl|mm7|chr8 (21564119-21563949) | |
647-788, gnl|Mm7|chr8 (21563971-21564112) | |
647-788, gnl|monDom2|scaffold_1 (79871810-79871635) | |
647-788, gnl|oryCun1|scaffold_184425 (103657-103836) | |
647-788, gnl|panTro1|chr7 (43575301-43575469) | |
647-788, gnl|rheMac2|chr8 (42757716-42757884) | |
647-788, gnl|rn3|chr16 (73717528-73717699) | |
647-788, gnl|tetNig1|chr12 (6019111-6018948) | |
953-1775, gnl|bosTau2|chr27 (23529331-23528484) | |
953-1775, gnl|Hg17|chr8 (42152829-42151907) | |
953-1775, gnl|Mm7|chr8 (21567262-21568166) |
Expressed library(ies): 23 entry(ies) | More info |
Expressed library(ies): 23 entry(ies) | Help | Less info |
cov (0.792917) | |
ova (0.516529) | |
spc (0.453463) | |
aor (0.390549) | |
bla (0.373042) | |
cmu (0.372787) | |
cut (0.339847) | |
sme (0.305437) | |
che (0.272628) | |
fce (0.271592) | |
ret (0.257467) | |
sug (0.254582) | |
cbe (0.239234) | |
mas (0.210305) | |
hea (0.204499) | |
sto (0.179824) | |
cki (0.165235) | |
fat (0.147427) | |
pla (0.133672) | |
ute (0.132784) | |
cly (0.120642) | |
cty (0.10408) | |
eje (0.0988338) |
Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cov (0.792917) | |
ova (0.516529) | |
spc (0.453463) | |
aor (0.390549) | |
bla (0.373042) | |
cmu (0.372787) | |
cut (0.339847) | |
sme (0.305437) | |
che (0.272628) | |
fce (0.271592) | |
ret (0.257467) | |
sug (0.254582) | |
cbe (0.239234) | |
mas (0.210305) | |
hea (0.204499) | |
sto (0.179824) | |
cki (0.165235) | |
fat (0.147427) | |
pla (0.133672) | |
ute (0.132784) | |
cly (0.120642) | |
cty (0.10408) | |
eje (0.0988338) |