Ss1.1-Pig4-TMW8066D05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTCTTCAGAACCAGCCCCAAGCACAAACTCAAAATCATCAAGGCTTTGCAGGAGTCAG GCGCGATCGTGGCCATGACAGGGGACGGGGTGAACGACGCGGTGGCCCTGAAGTCAGCGG ACATCGGGATCGCCATGGGGCAGATGGGCACCGACGTGAGCAAGGAAGCCGCCAACATGA TCCTGGTGGACGACGACTTCTCAGCCATCATGAACGCGGTGGAGGAAGGCAAGGGGATTT TTCACAACATCAAGAACTTTGTCCGATTTCAGCTGAGCACGAGCATCTCCGCCTTGAGCC TCATCGCGCTGTCCACCGTGTGCGACCTGCCCAGCCCCCTCAACGCCATGCAGATCCTGT GGATCAACATCATCATGGACGGGCCGCCCGCGCAGAGCTTGGGGGTGGAGCCGGTGGATG GGGACGCCCTGCGGCAGCCGCCCCGCAACCTCAAGGACACCATCCTCAGCAGAGCCCTCA TCCTCAAAATCCTCCTGTCGGCCGCCGCCATCATCAGCGGCACCCTCTTCATCTTCTGGA AAGAGATGCCCGCAGACAAGGCCAGCACCCCGCGCACCACGACCATGACCTTCACCTGTT TCGTGCTCTTTGACCTGTTCAACGCCTTGACCTGCCGCTCCCAGACCAAGCTGATCTGCG AGATCGGCTTCCTCCGGAACCGCACGTTCCTCTACTCCGTGCTCGGCTCCATCCTGGGGC AGCTGGCGGTGATTTACGTGCCGCCCCTGCAGAAGGTCTTCCAGACGGAGAACCTGGGGG CGCTCGATCTGCTGCTTCTAACCGGCTTGGCCTCATCCGTGTTCGCCGTGTCTGAGCTCC TCAAACTATGCGAAAGGCTCTGCTCCAGGGCCAAGAAAGCACAGGCGCACCAGGAAGACG TATGATGGATCCCAACCATGTAAAAACCCTAAATCTCTATTTTTATGTGCCGGAGGCCCT CTTCCGCCCTCCCTCTTCCGAGGGGTGTTTCCCGTGTCAGGTCCCGCACGGGCTTTTCCT GGGACACCAGCGGGAAGCGGCGGCCCAGCCCCCCGTCTGTCCACCGTGCTCCCCGCGGGG CCCTGGGACAGCGAGGAGCCGGCTCAGAACGCCTTGCTATTTATTAAATCCTGGTGATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTCTTCAGAACCAGCCCCAAGCACAAACTCAAAATCATCAAGGCTTTGCAGGAGTCAG GCGCGATCGTGGCCATGACAGGGGACGGGGTGAACGACGCGGTGGCCCTGAAGTCAGCGG ACATCGGGATCGCCATGGGGCAGATGGGCACCGACGTGAGCAAGGAAGCCGCCAACATGA TCCTGGTGGACGACGACTTCTCAGCCATCATGAACGCGGTGGAGGAAGGCAAGGGGATTT TTCACAACATCAAGAACTTTGTCCGATTTCAGCTGAGCACGAGCATCTCCGCCTTGAGCC TCATCGCGCTGTCCACCGTGTGCGACCTGCCCAGCCCCCTCAACGCCATGCAGATCCTGT GGATCAACATCATCATGGACGGGCCGCCCGCGCAGAGCTTGGGGGTGGAGCCGGTGGATG GGGACGCCCTGCGGCAGCCGCCCCGCAACCTCAAGGACACCATCCTCAGCAGAGCCCTCA TCCTCAAAATCCTCCTGTCGGCCGCCGCCATCATCAGCGGCACCCTCTTCATCTTCTGGA AAGAGATGCCCGCAGACAAGGCCAGCACCCCGCGCACCACGACCATGACCTTCACCTGTT TCGTGCTCTTTGACCTGTTCAACGCCTTGACCTGCCGCTCCCAGACCAAGCTGATCTGCG AGATCGGCTTCCTCCGGAACCGCACGTTCCTCTACTCCGTGCTCGGCTCCATCCTGGGGC AGCTGGCGGTGATTTACGTGCCGCCCCTGCAGAAGGTCTTCCAGACGGAGAACCTGGGGG CGCTCGATCTGCTGCTTCTAACCGGCTTGGCCTCATCCGTGTTCGCCGTGTCTGAGCTCC TCAAACTATGCGAAAGGCTCTGCTCCAGGGCCAAGAAAGCACAGGCGCACCAGGAAGACG TATGATGGATCCCAACCATGTAAAAACCCTAAATCTCTATTTTTATGTGCCGGAGGCCCT CTTCCGCCCTCCCTCTTCCGAGGGGTGTTTCCCGTGTCAGGTCCCGCACGGGCTTTTCCT GGGACACCAGCGGGAAGCGGCGGCCCAGCCCCCCGTCTGTCCACCGTGCTCCCCGCGGGG CCCTGGGACAGCGAGGAGCCGGCTCAGAACGCCTTGCTATTTATTAAATCCTGGTGATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 100-217, + strand, RNAz p=0.656726 | |
| 941-1043, - strand, RNAz p=0.985856 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 100-217, + strand, RNAz p=0.656726 | |
| 941-1043, - strand, RNAz p=0.985856 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 42-217, gnl|bosTau2|chr18 (10545662-10545487) | |
| 42-217, gnl|canFam2|chr5 (70992906-70992733) | |
| 42-217, gnl|danRer3|chr16 (38614175-38614002) | |
| 42-217, gnl|dasNov1|scaffold_12214 (46084-45936) | |
| 42-217, gnl|echTel1|scaffold_217830 (6305-6132) | |
| 42-217, gnl|fr1|chrUn (260047250-260047077) | |
| 42-217, gnl|galGal2|chr11 (17145589-17145762) | |
| 42-217, gnl|hg17|chr16 (83045924-83046097) | |
| 42-217, gnl|Hg17|chr16 (83045922-83046097) | |
| 42-217, gnl|loxAfr1|scaffold_6794 (43582-43755) | |
| 42-217, gnl|mm7|chr8 (118384144-118384317) | |
| 42-217, gnl|Mm7|chr8 (118384142-118384317) | |
| 42-217, gnl|monDom2|scaffold_23 (16068796-16068623) | |
| 42-217, gnl|oryCun1|scaffold_206110 (3672-3830) | |
| 42-217, gnl|panTro1|chr18 (77938751-77938924) | |
| 42-217, gnl|rheMac2|chr20 (82575460-82575633) | |
| 42-217, gnl|rn3|chr8 (110546988-110546815) | |
| 42-217, gnl|tetNig1|chrUn_random (47034466-47034293) | |
| 42-217, gnl|xenTro1|scaffold_79 (2351179-2351352) | |
| 277-417, gnl|bosTau2|chr18 (10544935-10544795) | |
| 277-417, gnl|canFam2|chr5 (70991364-70991240) | |
| 277-417, gnl|danRer3|chr16 (38611645-38611522) | |
| 277-417, gnl|dasNov1|scaffold_10671 (3392-3515) | |
| 277-417, gnl|echTel1|scaffold_178379 (3789-3665) | |
| 277-417, gnl|fr1|chrUn (260046872-260046742) | |
| 277-417, gnl|galGal2|chr11 (17146563-17146702) | |
| 277-417, gnl|hg17|chr16 (83050375-83050515) | |
| 277-417, gnl|Hg17|chr16 (83050373-83050511) | |
| 277-417, gnl|loxAfr1|scaffold_6794 (45426-45550) | |
| 277-417, gnl|mm7|chr8 (118385928-118386052) | |
| 277-417, gnl|Mm7|chr8 (118385926-118386066) | |
| 277-417, gnl|monDom2|scaffold_23 (16067072-16066943) | |
| 277-417, gnl|oryCun1|scaffold_169179 (11788-11664) | |
| 277-417, gnl|panTro1|chr18 (77940613-77940737) | |
| 277-417, gnl|rheMac2|chr20 (82577165-82577289) | |
| 277-417, gnl|rn3|chr8 (110544282-110544158) | |
| 277-417, gnl|tetNig1|chrUn_random (47034101-47033963) | |
| 277-417, gnl|xenTro1|scaffold_79 (2353840-2353963) | |
| 628-784, gnl|bosTau2|chr18 (10514140-10513983) | |
| 628-784, gnl|Hg17|chr16 (83053078-83053234) | |
| 628-784, gnl|Mm7|chr8 (118388942-118389100) | |
| 786-1140, gnl|bosTau2|chr18 (10512394-10512018) | |
| 786-1140, gnl|Hg17|chr16 (83054720-83055102) | |
| 786-1140, gnl|Mm7|chr8 (118390353-118390696) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-217, gnl|bosTau2|chr18 (10545662-10545487) | |
| 42-217, gnl|canFam2|chr5 (70992906-70992733) | |
| 42-217, gnl|danRer3|chr16 (38614175-38614002) | |
| 42-217, gnl|dasNov1|scaffold_12214 (46084-45936) | |
| 42-217, gnl|echTel1|scaffold_217830 (6305-6132) | |
| 42-217, gnl|fr1|chrUn (260047250-260047077) | |
| 42-217, gnl|galGal2|chr11 (17145589-17145762) | |
| 42-217, gnl|hg17|chr16 (83045924-83046097) | |
| 42-217, gnl|Hg17|chr16 (83045922-83046097) | |
| 42-217, gnl|loxAfr1|scaffold_6794 (43582-43755) | |
| 42-217, gnl|mm7|chr8 (118384144-118384317) | |
| 42-217, gnl|Mm7|chr8 (118384142-118384317) | |
| 42-217, gnl|monDom2|scaffold_23 (16068796-16068623) | |
| 42-217, gnl|oryCun1|scaffold_206110 (3672-3830) | |
| 42-217, gnl|panTro1|chr18 (77938751-77938924) | |
| 42-217, gnl|rheMac2|chr20 (82575460-82575633) | |
| 42-217, gnl|rn3|chr8 (110546988-110546815) | |
| 42-217, gnl|tetNig1|chrUn_random (47034466-47034293) | |
| 42-217, gnl|xenTro1|scaffold_79 (2351179-2351352) | |
| 277-417, gnl|bosTau2|chr18 (10544935-10544795) | |
| 277-417, gnl|canFam2|chr5 (70991364-70991240) | |
| 277-417, gnl|danRer3|chr16 (38611645-38611522) | |
| 277-417, gnl|dasNov1|scaffold_10671 (3392-3515) | |
| 277-417, gnl|echTel1|scaffold_178379 (3789-3665) | |
| 277-417, gnl|fr1|chrUn (260046872-260046742) | |
| 277-417, gnl|galGal2|chr11 (17146563-17146702) | |
| 277-417, gnl|hg17|chr16 (83050375-83050515) | |
| 277-417, gnl|Hg17|chr16 (83050373-83050511) | |
| 277-417, gnl|loxAfr1|scaffold_6794 (45426-45550) | |
| 277-417, gnl|mm7|chr8 (118385928-118386052) | |
| 277-417, gnl|Mm7|chr8 (118385926-118386066) | |
| 277-417, gnl|monDom2|scaffold_23 (16067072-16066943) | |
| 277-417, gnl|oryCun1|scaffold_169179 (11788-11664) | |
| 277-417, gnl|panTro1|chr18 (77940613-77940737) | |
| 277-417, gnl|rheMac2|chr20 (82577165-82577289) | |
| 277-417, gnl|rn3|chr8 (110544282-110544158) | |
| 277-417, gnl|tetNig1|chrUn_random (47034101-47033963) | |
| 277-417, gnl|xenTro1|scaffold_79 (2353840-2353963) | |
| 628-784, gnl|bosTau2|chr18 (10514140-10513983) | |
| 628-784, gnl|Hg17|chr16 (83053078-83053234) | |
| 628-784, gnl|Mm7|chr8 (118388942-118389100) | |
| 786-1140, gnl|bosTau2|chr18 (10512394-10512018) | |
| 786-1140, gnl|Hg17|chr16 (83054720-83055102) | |
| 786-1140, gnl|Mm7|chr8 (118390353-118390696) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |