Non-Coding RNA Search

Ss1.1-Pig4-TMW8066D18.3

Sequence:


               
               TGAACCAGTTCTGCAGTGTCCACACGCTTCAGGAGGTCTACATTGAGCTCTTTGATCAGA
TTGATGAAAATCTCAAACTGGCTTTGCAGCAGGATCTGACCTCCATGGCCCCTGGGCTTG
TCATCCAAGCTGTGCGTGTGACAAAGCCCAACATACCCGAGGCCATCCGCAGGAACTATG
AGCTGATGGAAAGTGAGAAGACAAAGCTTCTCATTGCAGCCCAGAAGCAGAAGGTGGTGG
AGAAGGAGGCCGAGACAGAGCGGAAGAAGGCCCTCATTGAGGCAGAGAAAGTGGCTCAGG
TTGCAGAAATCACCTACGGGCAGAAGGTGATGGAGAAGGAGACGGAGAAGAAGATTTCAG
AAATCGAAGATGCGGCGTTTCTGGCCCGAGAGAAGGCCAAGGCCGATGCCGAGTGCTACA
CTGCCATGAAAATCGCCGAAGCGAATAAGCTGAAGCTGACCCCTGAGTATCTGCAGCTGA
TGAAGTACAAGGCCATTGCTTCCAACAGCAAGATTTACTTTGGCAAAGACATCCCTAACA
TGTTCATGGACTCTGCGGGCAGCCTGGGGAAGCAGTTTGAGGGGCTCACTGACAAGCTGA
GCTTTGGCTTAGAAGATGAGCCCCTGGAAGCAGGCACCGAGGAGAACTGAATGTTTTTGT
CCACAACCTCAGGTGACACTCAAAGAGATCTTGATTTTGTAAAGGACGAACTGGGTTGCC
CTCCCCTTCCACACTACCTTTGTTGACTCTCTTCCACGTGAAAAAAGAAGAAACGGACTT
AAATCTATTCCCCTTCCCGGGAAGGGAGGGCAGGGATTGATGAATTGGGGTTTTATGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACCAGTTCTGCAGTGTCCACACGCTTCAGGAGGTCTACATTGAGCTCTTTGATCAGA
TTGATGAAAATCTCAAACTGGCTTTGCAGCAGGATCTGACCTCCATGGCCCCTGGGCTTG
TCATCCAAGCTGTGCGTGTGACAAAGCCCAACATACCCGAGGCCATCCGCAGGAACTATG
AGCTGATGGAAAGTGAGAAGACAAAGCTTCTCATTGCAGCCCAGAAGCAGAAGGTGGTGG
AGAAGGAGGCCGAGACAGAGCGGAAGAAGGCCCTCATTGAGGCAGAGAAAGTGGCTCAGG
TTGCAGAAATCACCTACGGGCAGAAGGTGATGGAGAAGGAGACGGAGAAGAAGATTTCAG
AAATCGAAGATGCGGCGTTTCTGGCCCGAGAGAAGGCCAAGGCCGATGCCGAGTGCTACA
CTGCCATGAAAATCGCCGAAGCGAATAAGCTGAAGCTGACCCCTGAGTATCTGCAGCTGA
TGAAGTACAAGGCCATTGCTTCCAACAGCAAGATTTACTTTGGCAAAGACATCCCTAACA
TGTTCATGGACTCTGCGGGCAGCCTGGGGAAGCAGTTTGAGGGGCTCACTGACAAGCTGA
GCTTTGGCTTAGAAGATGAGCCCCTGGAAGCAGGCACCGAGGAGAACTGAATGTTTTTGT
CCACAACCTCAGGTGACACTCAAAGAGATCTTGATTTTGTAAAGGACGAACTGGGTTGCC
CTCCCCTTCCACACTACCTTTGTTGACTCTCTTCCACGTGAAAAAAGAAGAAACGGACTT
AAATCTATTCCCCTTCCCGGGAAGGGAGGGCAGGGATTGATGAATTGGGGTTTTATGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55630514|ref|XP_519707.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55630514|ref|XP_519707.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               272-372, + strand, RNAz p=0.5058

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-372, + strand, RNAz p=0.5058

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               272-372, gnl|bosTau2|chr27 (21538800-21538700)
               

               
               272-372, gnl|Hg17|chr8 (37728294-37728394)
               

               
               272-372, gnl|Mm7|chr8 (25789097-25789197)
               


               
               448-553, gnl|bosTau2|chr26 (11846981-11846876)
               

               
               448-553, gnl|Hg17|chr10 (101902101-101901996)
               

               
               448-553, gnl|Mm7|chr19 (43931023-43930918)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               272-372, gnl|bosTau2|chr27 (21538800-21538700)
               

               
               272-372, gnl|Hg17|chr8 (37728294-37728394)
               

               
               272-372, gnl|Mm7|chr8 (25789097-25789197)
               


               
               448-553, gnl|bosTau2|chr26 (11846981-11846876)
               

               
               448-553, gnl|Hg17|chr10 (101902101-101901996)
               

               
               448-553, gnl|Mm7|chr19 (43931023-43930918)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	272-372, gnl\|bosTau2\|chr27 (21538800-21538700)
	272-372, gnl\|Hg17\|chr8 (37728294-37728394)
	272-372, gnl\|Mm7\|chr8 (25789097-25789197)

	448-553, gnl\|bosTau2\|chr26 (11846981-11846876)
	448-553, gnl\|Hg17\|chr10 (101902101-101901996)
	448-553, gnl\|Mm7\|chr19 (43931023-43930918)