Ss1.1-Pig4-TMW8066D19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAATCCGGCAGAAGGGAGATTCTCCCCTGGAGCACCCCAAGCTTTCCAGGTCTGAGGA GAGCTGCCCTAAGAAAGGAAGTAAAAAGAAGCCAGTCAGAGATGAGGCTCCAGAATACAT CCCAATAGGAGATGGCCCCAAGACTCCTGCGAAGAAGAAGCTGAAGTCCAAGAAAAAGGC AGAGCCGACAGACACTGAGAAGCCAGCTCTGAAGAGGAAGAAGAAGAAGAAGAGGCAAGA GAGTAGAGGAGCAGAAGAATCTTGGGAGGAGGAGCCCGACACGGACTTGGAGGTGGTATT GGAGAAGAAGGGCAACATGGACGAGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCA AGAAGAGATCGATCGTGAGTCAGGCAAAACGGAAGCTCCTGACACCAAGAAGTGTCAACA AGGAACTCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAAAACGAGGAACAGAAACTGAA ATTTCTCAAACTCATGGGCGGCTTTAAAAACCTGTCGGCTTCACTGGGCCGCGCCCCTGC CGCGGCTGGAAGGCCCAGCATGGCCCTGAGCAAGCAGGCGGCCGATGCCCTGCAGCAGAA CCTGCAGCGGGACTACGACCGGGCCCTGAGCTGGAAGCATAGCCGGGGGGCCGGCCTCGG CTTCTCCCCCGCCCCGGACAAGATCTTCTATATTGACAGGAATGCATCCAAGTCAGTCAA GTTTGGAGATTAAACTCGACTCTCTGATCCCCCCAGACAGCCAGCATTGCTTGTCTGGAA TCGAACTCCTGCAAAGGTGAAGGACAAACGGGGTTGATCTGCTCGGACAAACGGGTGAGG GCAGCTCGTGTTTCGGGAGCCCGGAGACTGTGAGTGGCTGAAACCTGCGGTTTTTTGTAT TAAGCTTCCATCCCTGTCTGAAGACGGCGTGTGAGTAAGGACAGCTGACGTCTGTTGCGT GCTTGGTACACGCCAGGCACGTTCTAGGGCATCTCCCTTGCCTTAGTGTATTTAAGCGTC ACACTGATGAAATCGGTACTGTTGTCCCCATCTGGTAGATGAGGACACTGAGGTCCAGGG ATGAGGTAATAAAACTGCCTGGGCTCGTCACCCAGCCAGCAAGTGCCCAGTGGTACTTTG GTGTCCAAGCCCTGTGTCACTGTTCACTCTCAGAGTTCCCACGAGGGAATTTCACCCCCG AATACCCAGGCTGATGAATTAAAACGTCTTTTGATTAAAGAAACAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAATCCGGCAGAAGGGAGATTCTCCCCTGGAGCACCCCAAGCTTTCCAGGTCTGAGGA GAGCTGCCCTAAGAAAGGAAGTAAAAAGAAGCCAGTCAGAGATGAGGCTCCAGAATACAT CCCAATAGGAGATGGCCCCAAGACTCCTGCGAAGAAGAAGCTGAAGTCCAAGAAAAAGGC AGAGCCGACAGACACTGAGAAGCCAGCTCTGAAGAGGAAGAAGAAGAAGAAGAGGCAAGA GAGTAGAGGAGCAGAAGAATCTTGGGAGGAGGAGCCCGACACGGACTTGGAGGTGGTATT GGAGAAGAAGGGCAACATGGACGAGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCA AGAAGAGATCGATCGTGAGTCAGGCAAAACGGAAGCTCCTGACACCAAGAAGTGTCAACA AGGAACTCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAAAACGAGGAACAGAAACTGAA ATTTCTCAAACTCATGGGCGGCTTTAAAAACCTGTCGGCTTCACTGGGCCGCGCCCCTGC CGCGGCTGGAAGGCCCAGCATGGCCCTGAGCAAGCAGGCGGCCGATGCCCTGCAGCAGAA CCTGCAGCGGGACTACGACCGGGCCCTGAGCTGGAAGCATAGCCGGGGGGCCGGCCTCGG CTTCTCCCCCGCCCCGGACAAGATCTTCTATATTGACAGGAATGCATCCAAGTCAGTCAA GTTTGGAGATTAAACTCGACTCTCTGATCCCCCCAGACAGCCAGCATTGCTTGTCTGGAA TCGAACTCCTGCAAAGGTGAAGGACAAACGGGGTTGATCTGCTCGGACAAACGGGTGAGG GCAGCTCGTGTTTCGGGAGCCCGGAGACTGTGAGTGGCTGAAACCTGCGGTTTTTTGTAT TAAGCTTCCATCCCTGTCTGAAGACGGCGTGTGAGTAAGGACAGCTGACGTCTGTTGCGT GCTTGGTACACGCCAGGCACGTTCTAGGGCATCTCCCTTGCCTTAGTGTATTTAAGCGTC ACACTGATGAAATCGGTACTGTTGTCCCCATCTGGTAGATGAGGACACTGAGGTCCAGGG ATGAGGTAATAAAACTGCCTGGGCTCGTCACCCAGCCAGCAAGTGCCCAGTGGTACTTTG GTGTCCAAGCCCTGTGTCACTGTTCACTCTCAGAGTTCCCACGAGGGAATTTCACCCCCG AATACCCAGGCTGATGAATTAAAACGTCTTTTGATTAAAGAAACAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-160, - strand, RNAz p=0.999703 | |
| 538-737, - strand, RNAz p=0.638767 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-160, - strand, RNAz p=0.999703 | |
| 538-737, - strand, RNAz p=0.638767 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-272, gnl|bosTau2|chr25 (16990057-16989783) | |
| 1-272, gnl|canFam2|chr5 (45885695-45885403) | |
| 1-272, gnl|canFam2|chr5 (45885688-45885406) | |
| 1-272, gnl|canFam2|chr5 (45885695-45885403) | |
| 1-272, gnl|canFam2|chr6 (28596146-28596435) | |
| 1-272, gnl|dasNov1|scaffold_55897 (6870-7162) | |
| 1-272, gnl|dasNov1|scaffold_55897 (6873-7162) | |
| 1-272, gnl|dasNov1|scaffold_55897 (6877-7161) | |
| 1-272, gnl|dasNov1|scaffold_55897 (6870-7162) | |
| 1-272, gnl|echTel1|scaffold_284048 (45513-45782) | |
| 1-272, gnl|echTel1|scaffold_284048 (45513-45782) | |
| 1-272, gnl|echTel1|scaffold_284048 (45513-45773) | |
| 1-272, gnl|echTel1|scaffold_284048 (45511-45782) | |
| 1-272, gnl|hg17|chr12 (24627987-24628278) | |
| 1-272, gnl|Hg17|chr16 (19633211-19632940) | |
| 1-272, gnl|hg17|chr2 (51649536-51649817) | |
| 1-272, gnl|hg17|chr6 (73753417-73753715) | |
| 1-272, gnl|hg17|chr8 (127154629-127154915) | |
| 1-272, gnl|mm7|chr7 (114775271-114774982) | |
| 1-272, gnl|mm7|chr7 (114775268-114774982) | |
| 1-272, gnl|mm7|chr7 (114775267-114774985) | |
| 1-272, gnl|mm7|chr7 (114775271-114774982) | |
| 1-272, gnl|Mm7|chr7 (114775249-114774984) | |
| 1-272, gnl|monDom2|scaffold_19 (39851999-39851661) | |
| 1-272, gnl|oryCun1|scaffold_173268 (61497-61205) | |
| 1-272, gnl|oryCun1|scaffold_173268 (61494-61205) | |
| 1-272, gnl|oryCun1|scaffold_173268 (61490-61203) | |
| 1-272, gnl|oryCun1|scaffold_173268 (61503-61205) | |
| 1-272, gnl|panTro1|chr12 (53763711-53763989) | |
| 1-272, gnl|panTro1|chr5 (74901573-74901871) | |
| 1-272, gnl|panTro1|chr7 (129885653-129885939) | |
| 1-272, gnl|panTro1|chrUn_random (51026558-51026849) | |
| 1-272, gnl|rheMac2|chr11 (24845612-24845917) | |
| 1-272, gnl|rheMac2|chr13 (51689837-51690114) | |
| 1-272, gnl|rheMac2|chr4 (69227259-69227556) | |
| 1-272, gnl|rheMac2|chr8 (128685328-128685616) | |
| 1-272, gnl|rn3|chr2 (66156035-66155748) | |
| 1-272, gnl|rn3|chr2 (66156035-66155748) | |
| 1-272, gnl|rn3|chr2 (66156031-66155751) | |
| 1-272, gnl|rn3|chr2 (66156038-66155748) | |
| 418-772, gnl|bosTau2|chr25 (16981715-16981362) | |
| 418-772, gnl|canFam2|chr5 (45885259-45884680) | |
| 418-772, gnl|canFam2|chr5 (45885260-45884938) | |
| 418-772, gnl|canFam2|chr6 (28607634-28607962) | |
| 418-772, gnl|dasNov1|scaffold_129553 (5573-5248) | |
| 418-772, gnl|dasNov1|scaffold_129553 (5571-4993) | |
| 418-772, gnl|dasNov1|scaffold_129553 (5573-5251) | |
| 418-772, gnl|echTel1|scaffold_284048 (50119-50447) | |
| 418-772, gnl|echTel1|scaffold_284048 (50120-50712) | |
| 418-772, gnl|echTel1|scaffold_284048 (50119-50444) | |
| 418-772, gnl|hg17|chr12 (24628418-24628767) | |
| 418-772, gnl|Hg17|chr16 (19626048-19625693) | |
| 418-772, gnl|hg17|chr2 (51649962-51650538) | |
| 418-772, gnl|hg17|chr6 (73753858-73754205) | |
| 418-772, gnl|loxAfr1|scaffold_452 (13841-14158) | |
| 418-772, gnl|loxAfr1|scaffold_452 (13842-14404) | |
| 418-772, gnl|loxAfr1|scaffold_452 (13841-14158) | |
| 418-772, gnl|mm7|chr7 (114768669-114768344) | |
| 418-772, gnl|mm7|chr7 (114768667-114768180) | |
| 418-772, gnl|mm7|chr7 (114768669-114768347) | |
| 418-772, gnl|Mm7|chr7 (114768671-114768327) | |
| 418-772, gnl|monDom2|scaffold_19 (39836043-39835723) | |
| 418-772, gnl|monDom2|scaffold_19 (39836046-39835496) | |
| 418-772, gnl|monDom2|scaffold_19 (39836046-39835726) | |
| 418-772, gnl|panTro1|chr12 (53764134-53764710) | |
| 418-772, gnl|panTro1|chr5 (74902014-74902349) | |
| 418-772, gnl|panTro1|chrUn_random (51026989-51027332) | |
| 418-772, gnl|rheMac2|chr11 (24846060-24846403) | |
| 418-772, gnl|rheMac2|chr13 (51690254-51690831) | |
| 418-772, gnl|rheMac2|chr4 (69227699-69228047) | |
| 418-772, gnl|rn3|chr2 (66155597-66155274) | |
| 418-772, gnl|rn3|chr2 (66155596-66155099) | |
| 418-772, gnl|rn3|chr2 (66155597-66155277) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-272, gnl|bosTau2|chr25 (16990057-16989783) | |
| 1-272, gnl|canFam2|chr5 (45885695-45885403) | |
| 1-272, gnl|canFam2|chr5 (45885688-45885406) | |
| 1-272, gnl|canFam2|chr5 (45885695-45885403) | |
| 1-272, gnl|canFam2|chr6 (28596146-28596435) | |
| 1-272, gnl|dasNov1|scaffold_55897 (6870-7162) | |
| 1-272, gnl|dasNov1|scaffold_55897 (6873-7162) | |
| 1-272, gnl|dasNov1|scaffold_55897 (6877-7161) | |
| 1-272, gnl|dasNov1|scaffold_55897 (6870-7162) | |
| 1-272, gnl|echTel1|scaffold_284048 (45513-45782) | |
| 1-272, gnl|echTel1|scaffold_284048 (45513-45782) | |
| 1-272, gnl|echTel1|scaffold_284048 (45513-45773) | |
| 1-272, gnl|echTel1|scaffold_284048 (45511-45782) | |
| 1-272, gnl|hg17|chr12 (24627987-24628278) | |
| 1-272, gnl|Hg17|chr16 (19633211-19632940) | |
| 1-272, gnl|hg17|chr2 (51649536-51649817) | |
| 1-272, gnl|hg17|chr6 (73753417-73753715) | |
| 1-272, gnl|hg17|chr8 (127154629-127154915) | |
| 1-272, gnl|mm7|chr7 (114775271-114774982) | |
| 1-272, gnl|mm7|chr7 (114775268-114774982) | |
| 1-272, gnl|mm7|chr7 (114775267-114774985) | |
| 1-272, gnl|mm7|chr7 (114775271-114774982) | |
| 1-272, gnl|Mm7|chr7 (114775249-114774984) | |
| 1-272, gnl|monDom2|scaffold_19 (39851999-39851661) | |
| 1-272, gnl|oryCun1|scaffold_173268 (61497-61205) | |
| 1-272, gnl|oryCun1|scaffold_173268 (61494-61205) | |
| 1-272, gnl|oryCun1|scaffold_173268 (61490-61203) | |
| 1-272, gnl|oryCun1|scaffold_173268 (61503-61205) | |
| 1-272, gnl|panTro1|chr12 (53763711-53763989) | |
| 1-272, gnl|panTro1|chr5 (74901573-74901871) | |
| 1-272, gnl|panTro1|chr7 (129885653-129885939) | |
| 1-272, gnl|panTro1|chrUn_random (51026558-51026849) | |
| 1-272, gnl|rheMac2|chr11 (24845612-24845917) | |
| 1-272, gnl|rheMac2|chr13 (51689837-51690114) | |
| 1-272, gnl|rheMac2|chr4 (69227259-69227556) | |
| 1-272, gnl|rheMac2|chr8 (128685328-128685616) | |
| 1-272, gnl|rn3|chr2 (66156035-66155748) | |
| 1-272, gnl|rn3|chr2 (66156035-66155748) | |
| 1-272, gnl|rn3|chr2 (66156031-66155751) | |
| 1-272, gnl|rn3|chr2 (66156038-66155748) | |
| 418-772, gnl|bosTau2|chr25 (16981715-16981362) | |
| 418-772, gnl|canFam2|chr5 (45885259-45884680) | |
| 418-772, gnl|canFam2|chr5 (45885260-45884938) | |
| 418-772, gnl|canFam2|chr6 (28607634-28607962) | |
| 418-772, gnl|dasNov1|scaffold_129553 (5573-5248) | |
| 418-772, gnl|dasNov1|scaffold_129553 (5571-4993) | |
| 418-772, gnl|dasNov1|scaffold_129553 (5573-5251) | |
| 418-772, gnl|echTel1|scaffold_284048 (50119-50447) | |
| 418-772, gnl|echTel1|scaffold_284048 (50120-50712) | |
| 418-772, gnl|echTel1|scaffold_284048 (50119-50444) | |
| 418-772, gnl|hg17|chr12 (24628418-24628767) | |
| 418-772, gnl|Hg17|chr16 (19626048-19625693) | |
| 418-772, gnl|hg17|chr2 (51649962-51650538) | |
| 418-772, gnl|hg17|chr6 (73753858-73754205) | |
| 418-772, gnl|loxAfr1|scaffold_452 (13841-14158) | |
| 418-772, gnl|loxAfr1|scaffold_452 (13842-14404) | |
| 418-772, gnl|loxAfr1|scaffold_452 (13841-14158) | |
| 418-772, gnl|mm7|chr7 (114768669-114768344) | |
| 418-772, gnl|mm7|chr7 (114768667-114768180) | |
| 418-772, gnl|mm7|chr7 (114768669-114768347) | |
| 418-772, gnl|Mm7|chr7 (114768671-114768327) | |
| 418-772, gnl|monDom2|scaffold_19 (39836043-39835723) | |
| 418-772, gnl|monDom2|scaffold_19 (39836046-39835496) | |
| 418-772, gnl|monDom2|scaffold_19 (39836046-39835726) | |
| 418-772, gnl|panTro1|chr12 (53764134-53764710) | |
| 418-772, gnl|panTro1|chr5 (74902014-74902349) | |
| 418-772, gnl|panTro1|chrUn_random (51026989-51027332) | |
| 418-772, gnl|rheMac2|chr11 (24846060-24846403) | |
| 418-772, gnl|rheMac2|chr13 (51690254-51690831) | |
| 418-772, gnl|rheMac2|chr4 (69227699-69228047) | |
| 418-772, gnl|rn3|chr2 (66155597-66155274) | |
| 418-772, gnl|rn3|chr2 (66155596-66155099) | |
| 418-772, gnl|rn3|chr2 (66155597-66155277) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cli (0.152812) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| nbm (0.0993246) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| nbm (0.0993246) |