Ss1.1-Pig4-TMW8066D21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGGGCGCGCGCGCGGACGGCCGGGCGGCGGCAGCTCCCGGAGGCGGTGGCTTCACTTTC CTGGACTCAGGGGCGACCACAGCAACAGCCGCGGGCAGCAGCCTCGGGACCCGGAGCTGG AACGGCCGGGGCGGCGGCGGCGGCGCCGAGGGATCTAAAATGTCCACTGAGGCACAAAGA GTTGATGACAGTCCAAGCACTAGTGGAGGAAGTTCTGATGGAGACCAACGTGAAAGTGTC CAGCAAGAACCAGAAAGAGAACAAGTTCAGCCCAAGAAAAAGGAGGGAAAAATATCCAGC AAAACAGCTGCTAAATTGTCAACTAGTGCTAAGAGAATTCAGAAGGAACTTGCAGAAATT ACATTGGACCCACCTCCCAACTGTAGTGCTGGACCCAAAGGAGACAACATTTATGAATGG AGGTCAACTATATTGGGACCCCCAGGATCTGTCTATGAAGGAGGGGTGTTCTTTCTTGAC ATTACCTTTTCACCAGACTATCCGTTTAAACCCCCTAAGGTTACCTTCCGAACAAGAATC TATCACTGTAATATTAACAGCCAAGGCGTGATCTGTCTGGACATACTGAAGGACAACTGG AGTCCAGCCCTCACCATCTCAAAAGTTCTCCTCTCCATCTGCTCACTTCTTACAGACTGC AATCCTGCTGACCCGCTGGTGGGCAGCATCGCCACACAGTACATGACCAACAGGGCGGAG CACGACCGGATGGCCAGACAGTGGACCAAGCGGTACGCCACATAGGGCCCGGCCCGTGGG CATGCTCACCAAGTGCATCGGGGCCCTGGACCTCGGCTCTGGTTGTCTTATTTTTATTAC ATTTTGAACCGTTTTGTGATGGAATGTCATCCATCCCCCCACCCTGTTCCTTTGCTCTCC CTTCCCAACCCTTCACGTTTTACCCCCTTTTTAATTTCTATTAACTTGAAAGATTTGGTT ATGTTTCCCCCCCCCACCCAGCGGGCATGGGAACTTTCGTTTTCAGTGCAGACGATGTTG GATCTGTAATAAGAGCTTTCTTACAAAGCTTTGTATTACCGTGTGGTTTTTGGTTTGGGC TGTTTATTTTATTTTGATTTCTTTTCTCCTTTTATGTGATCTTCGGGAAAACACAAATTC AGAGTTATATCTCGTTTCTACTTCAATGTAGTGCTTAGGGTTAATTTTTTGTACTGAAGT CTTTATTGTCGGGCGCATGCTCCTGGGAACAAGATTTTGTACAAAAGCTTCAATCAGAAT CACTGTGCGTTACTGAGACTCTGTTTATCACTAGCCTTCTGTGCCCACTCAGAAGACTGT TGGAATGAACAAAATAATAATGTATTTTGATTTACTTAAAGTGCTTGTAAATTTCTTAGG GACCTGCCACTTTTGACTGTGGATCAGTTGATGTACACTTGTATTATTAAAGCACTCAAT AAATCACTGTGGCTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGGGCGCGCGCGCGGACGGCCGGGCGGCGGCAGCTCCCGGAGGCGGTGGCTTCACTTTC CTGGACTCAGGGGCGACCACAGCAACAGCCGCGGGCAGCAGCCTCGGGACCCGGAGCTGG AACGGCCGGGGCGGCGGCGGCGGCGCCGAGGGATCTAAAATGTCCACTGAGGCACAAAGA GTTGATGACAGTCCAAGCACTAGTGGAGGAAGTTCTGATGGAGACCAACGTGAAAGTGTC CAGCAAGAACCAGAAAGAGAACAAGTTCAGCCCAAGAAAAAGGAGGGAAAAATATCCAGC AAAACAGCTGCTAAATTGTCAACTAGTGCTAAGAGAATTCAGAAGGAACTTGCAGAAATT ACATTGGACCCACCTCCCAACTGTAGTGCTGGACCCAAAGGAGACAACATTTATGAATGG AGGTCAACTATATTGGGACCCCCAGGATCTGTCTATGAAGGAGGGGTGTTCTTTCTTGAC ATTACCTTTTCACCAGACTATCCGTTTAAACCCCCTAAGGTTACCTTCCGAACAAGAATC TATCACTGTAATATTAACAGCCAAGGCGTGATCTGTCTGGACATACTGAAGGACAACTGG AGTCCAGCCCTCACCATCTCAAAAGTTCTCCTCTCCATCTGCTCACTTCTTACAGACTGC AATCCTGCTGACCCGCTGGTGGGCAGCATCGCCACACAGTACATGACCAACAGGGCGGAG CACGACCGGATGGCCAGACAGTGGACCAAGCGGTACGCCACATAGGGCCCGGCCCGTGGG CATGCTCACCAAGTGCATCGGGGCCCTGGACCTCGGCTCTGGTTGTCTTATTTTTATTAC ATTTTGAACCGTTTTGTGATGGAATGTCATCCATCCCCCCACCCTGTTCCTTTGCTCTCC CTTCCCAACCCTTCACGTTTTACCCCCTTTTTAATTTCTATTAACTTGAAAGATTTGGTT ATGTTTCCCCCCCCCACCCAGCGGGCATGGGAACTTTCGTTTTCAGTGCAGACGATGTTG GATCTGTAATAAGAGCTTTCTTACAAAGCTTTGTATTACCGTGTGGTTTTTGGTTTGGGC TGTTTATTTTATTTTGATTTCTTTTCTCCTTTTATGTGATCTTCGGGAAAACACAAATTC AGAGTTATATCTCGTTTCTACTTCAATGTAGTGCTTAGGGTTAATTTTTTGTACTGAAGT CTTTATTGTCGGGCGCATGCTCCTGGGAACAAGATTTTGTACAAAAGCTTCAATCAGAAT CACTGTGCGTTACTGAGACTCTGTTTATCACTAGCCTTCTGTGCCCACTCAGAAGACTGT TGGAATGAACAAAATAATAATGTATTTTGATTTACTTAAAGTGCTTGTAAATTTCTTAGG GACCTGCCACTTTTGACTGTGGATCAGTTGATGTACACTTGTATTATTAAAGCACTCAAT AAATCACTGTGGCTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 888-997, - strand, RNAz p=0.881067 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 888-997, - strand, RNAz p=0.881067 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 385-521, gnl|bosTau2|chr27 (30695316-30695180) | |
| 385-521, gnl|canFam2|chr23 (23259150-23258966) | |
| 385-521, gnl|danRer3|chr23 (35892706-35892533) | |
| 385-521, gnl|dasNov1|scaffold_8467 (8386-8558) | |
| 385-521, gnl|echTel1|scaffold_315219 (39380-39564) | |
| 385-521, gnl|fr1|chrUn (197650972-197651131) | |
| 385-521, gnl|galGal2|chr2 (36143873-36144057) | |
| 385-521, gnl|hg17|chr3 (23516070-23516254) | |
| 385-521, gnl|Hg17|chr3 (23516101-23516237) | |
| 385-521, gnl|loxAfr1|scaffold_45975 (322-506) | |
| 385-521, gnl|mm7|chr14 (16448479-16448295) | |
| 385-521, gnl|Mm7|chr14 (16448446-16448310) | |
| 385-521, gnl|monDom2|scaffold_7 (79336058-79336238) | |
| 385-521, gnl|oryCun1|scaffold_110357 (4534-4350) | |
| 385-521, gnl|panTro1|chr2 (24450530-24450714) | |
| 385-521, gnl|rheMac2|chr2 (165800331-165800514) | |
| 385-521, gnl|rn3|chr15 (8770974-8771157) | |
| 385-521, gnl|tetNig1|chrUn_random (134840187-134840046) | |
| 385-521, gnl|xenTro1|scaffold_43 (1247534-1247718) | |
| 667-769, gnl|bosTau2|chr27 (30850594-30850492) | |
| 667-769, gnl|Hg17|chr3 (23606228-23606335) | |
| 667-769, gnl|Mm7|chr14 (16392405-16392298) | |
| 834-1460, gnl|bosTau2|chr27 (30850451-30849830) | |
| 834-1460, gnl|Hg17|chr3 (23606414-23607071) | |
| 834-1460, gnl|Mm7|chr14 (16392229-16391591) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 385-521, gnl|bosTau2|chr27 (30695316-30695180) | |
| 385-521, gnl|canFam2|chr23 (23259150-23258966) | |
| 385-521, gnl|danRer3|chr23 (35892706-35892533) | |
| 385-521, gnl|dasNov1|scaffold_8467 (8386-8558) | |
| 385-521, gnl|echTel1|scaffold_315219 (39380-39564) | |
| 385-521, gnl|fr1|chrUn (197650972-197651131) | |
| 385-521, gnl|galGal2|chr2 (36143873-36144057) | |
| 385-521, gnl|hg17|chr3 (23516070-23516254) | |
| 385-521, gnl|Hg17|chr3 (23516101-23516237) | |
| 385-521, gnl|loxAfr1|scaffold_45975 (322-506) | |
| 385-521, gnl|mm7|chr14 (16448479-16448295) | |
| 385-521, gnl|Mm7|chr14 (16448446-16448310) | |
| 385-521, gnl|monDom2|scaffold_7 (79336058-79336238) | |
| 385-521, gnl|oryCun1|scaffold_110357 (4534-4350) | |
| 385-521, gnl|panTro1|chr2 (24450530-24450714) | |
| 385-521, gnl|rheMac2|chr2 (165800331-165800514) | |
| 385-521, gnl|rn3|chr15 (8770974-8771157) | |
| 385-521, gnl|tetNig1|chrUn_random (134840187-134840046) | |
| 385-521, gnl|xenTro1|scaffold_43 (1247534-1247718) | |
| 667-769, gnl|bosTau2|chr27 (30850594-30850492) | |
| 667-769, gnl|Hg17|chr3 (23606228-23606335) | |
| 667-769, gnl|Mm7|chr14 (16392405-16392298) | |
| 834-1460, gnl|bosTau2|chr27 (30850451-30849830) | |
| 834-1460, gnl|Hg17|chr3 (23606414-23607071) | |
| 834-1460, gnl|Mm7|chr14 (16392229-16391591) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ece (0.45861) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| mas (0.210305) | |
| aor (0.195274) | |
| ton (0.1755) | |
| fco (0.157208) | |
| lun (0.150489) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| cov (0.132153) | |
| bla (0.124347) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| mas (0.210305) | |
| aor (0.195274) | |
| ton (0.1755) | |
| fco (0.157208) | |
| lun (0.150489) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| cov (0.132153) | |
| bla (0.124347) | |
| clu (0.119646) | |
| cty (0.10408) |