Non-Coding RNA Search

Ss1.1-Pig4-TMW8066D23.3

Sequence:


               
               GCGCCTCCTACCGGACCCGGCGCGAAACAGTACACTCTGGGTCCAACGGGCATTTATTGA
TCGCCCACGGTATGCCAGCGTGAGATACTCTGGATGCCGTCACCGCCGTGAGAGCGTAGA
GAAGACCAGTCGCCGAAGAGCGGGTCTCCTTCCAACGCCCGGCGCCGCCCGGGCCCGGAT
CTGAGCGCCGGATGGCAGGGGAGCTGCTGGGAGAGGAGGGCGCGGCGGGCCGGTAGGGGG
CGCGGCGGGGCTGTACCGGGTGGGGGACCCAGCCGCAAGCAGATGGCGGCGCCAGGCGCG
GGGCCCGGGCCGGGGGCGCCACCAGGGCTGGAAGCGGCCCTACAGAAGCTGGCGCTGCGG
CGGAAGAAGGTGCTGAGCGCCGAGGAGACGGAGCTGTTCGAGCTGGCTCAGGCTGCGGGC
GGCGCCATGGACCCCGAAGTGTTCAAGATCCTGGTGGACCTGCTAAAGCTGAACGTGGCG
CCCCTCGCCGTATTCCAGATGCTGAAGTCCATGTGCGCTGGGCAGCGGCTGGCGAGCGAG
CCCCAAGACCCCGTGGCCGTGCCCCTGCCCACGACCAGCGTGCCTGAGACCCGAGGGAGA
AACAGAGGGAGCAGTGCTCTGGGCGGTGGCCCAGCGCTGGCAGAACGCAGCGGCCGGGAA
GGATCCAGCCAGAGGATGCCCCGCCAGCCCAGTGCCACCAGGCTGCCCAAGGGGGGCGGG
CCAGGGAAGAGCCCCACACGGAGCACCTGAGTGGGAGGCTCCCTATGTATACAGCCTGCC
TCTTGTTTCCTCCCGTTGGAATAAACTTACTGAAAAACTGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCTCCTACCGGACCCGGCGCGAAACAGTACACTCTGGGTCCAACGGGCATTTATTGA
TCGCCCACGGTATGCCAGCGTGAGATACTCTGGATGCCGTCACCGCCGTGAGAGCGTAGA
GAAGACCAGTCGCCGAAGAGCGGGTCTCCTTCCAACGCCCGGCGCCGCCCGGGCCCGGAT
CTGAGCGCCGGATGGCAGGGGAGCTGCTGGGAGAGGAGGGCGCGGCGGGCCGGTAGGGGG
CGCGGCGGGGCTGTACCGGGTGGGGGACCCAGCCGCAAGCAGATGGCGGCGCCAGGCGCG
GGGCCCGGGCCGGGGGCGCCACCAGGGCTGGAAGCGGCCCTACAGAAGCTGGCGCTGCGG
CGGAAGAAGGTGCTGAGCGCCGAGGAGACGGAGCTGTTCGAGCTGGCTCAGGCTGCGGGC
GGCGCCATGGACCCCGAAGTGTTCAAGATCCTGGTGGACCTGCTAAAGCTGAACGTGGCG
CCCCTCGCCGTATTCCAGATGCTGAAGTCCATGTGCGCTGGGCAGCGGCTGGCGAGCGAG
CCCCAAGACCCCGTGGCCGTGCCCCTGCCCACGACCAGCGTGCCTGAGACCCGAGGGAGA
AACAGAGGGAGCAGTGCTCTGGGCGGTGGCCCAGCGCTGGCAGAACGCAGCGGCCGGGAA
GGATCCAGCCAGAGGATGCCCCGCCAGCCCAGTGCCACCAGGCTGCCCAAGGGGGGCGGG
CCAGGGAAGAGCCCCACACGGAGCACCTGAGTGGGAGGCTCCCTATGTATACAGCCTGCC
TCTTGTTTCCTCCCGTTGGAATAAACTTACTGAAAAACTGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6NZ67_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6NZ67_HUMAN

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               223-447, gnl|bosTau2|chr17 (45701968-45701737)
               

               
               223-447, gnl|Hg17|chr2 (132083752-132083511)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-447, gnl|bosTau2|chr17 (45701968-45701737)
               

               
               223-447, gnl|Hg17|chr2 (132083752-132083511)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               elu (0.385356)
               

               
               ese (0.379507)
               

               
               eye (0.341006)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 21 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               eye (0.341006)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	223-447, gnl\|bosTau2\|chr17 (45701968-45701737)
	223-447, gnl\|Hg17\|chr2 (132083752-132083511)

	elu (0.385356)
	ese (0.379507)
	eye (0.341006)
	hlv (0.278513)
	pla (0.267344)
	nmm (0.265604)
	tes (0.207814)
	fli (0.202881)
	nlu (0.191681)
	mcp (0.170648)
	nco (0.161734)
	cli (0.152812)
	hyp (0.142837)
	nca (0.136874)
	cov (0.132153)
	ova (0.129132)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)