Non-Coding RNA Search

Ss1.1-Pig4-TMW8066E04.3

Sequence:


               
               CTTAAGGGCAGCGGCTGAACGTCCGGAAAGAGGTGATTTGTTTTCAGAAGTGGCACGAAA
TGGGATTGGAGCATTTTGGGGTGTTTTTTTCTCTTAGTTTATTTAACTAGTGATTGGAAA
AAGGGAGAGTTTCTAAAAAGAAACCAAGTTGGGATTACCTAGGCGGCTCTGGACTGTTAA
GAGGTCTAGAGAAAAAAATTCACAGTAATTTATTATGGTGATCGTTTGAGCAGTTGATTC
TGAGTCAGTATCTATTTGCTGAATGTGGTTGTAAATGGGATTTGGATTAGGAAAAAAAAT
TTTTCTTTTTTTAATCCTATATGACTCTTTCTCGGGTACCAATGACCCTAGTAAGGTTCT
CTGGGTACTTGGTTACAACACTAATATATATACTCTGAGGCGTGTATTACTAATTTACAG
AAGCTTAAATCTGATTGTTTATGGATTGGTATAATATCCATATTATATATGTCTGATAAT
ATGAGCTACTAGGTGGGGGTTGGAATCCAAACAAAACTTGTGTTTAGCTACCTTTTTTTG
TGTCTTTGCAAACTTCTTTAACTGTTATGCATTTTTTTAGTAATAGCTCTTCAAGTCTGC
AATAAAAAATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAACAAAATGGAA
AAAGTACTGGACCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTAAAGTGGAAGGGG
TTTACAGATGCAGACAATACTTGGGAACCTGAAGAAAATTTGGATTGTCCAGAGTTAATT
GAAGCATTTCTTAATTCTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAAGGGCAGCGGCTGAACGTCCGGAAAGAGGTGATTTGTTTTCAGAAGTGGCACGAAA
TGGGATTGGAGCATTTTGGGGTGTTTTTTTCTCTTAGTTTATTTAACTAGTGATTGGAAA
AAGGGAGAGTTTCTAAAAAGAAACCAAGTTGGGATTACCTAGGCGGCTCTGGACTGTTAA
GAGGTCTAGAGAAAAAAATTCACAGTAATTTATTATGGTGATCGTTTGAGCAGTTGATTC
TGAGTCAGTATCTATTTGCTGAATGTGGTTGTAAATGGGATTTGGATTAGGAAAAAAAAT
TTTTCTTTTTTTAATCCTATATGACTCTTTCTCGGGTACCAATGACCCTAGTAAGGTTCT
CTGGGTACTTGGTTACAACACTAATATATATACTCTGAGGCGTGTATTACTAATTTACAG
AAGCTTAAATCTGATTGTTTATGGATTGGTATAATATCCATATTATATATGTCTGATAAT
ATGAGCTACTAGGTGGGGGTTGGAATCCAAACAAAACTTGTGTTTAGCTACCTTTTTTTG
TGTCTTTGCAAACTTCTTTAACTGTTATGCATTTTTTTAGTAATAGCTCTTCAAGTCTGC
AATAAAAAATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAACAAAATGGAA
AAAGTACTGGACCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTAAAGTGGAAGGGG
TTTACAGATGCAGACAATACTTGGGAACCTGAAGAAAATTTGGATTGTCCAGAGTTAATT
GAAGCATTTCTTAATTCTCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               686-804, - strand, RNAz p=0.763512

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               686-804, - strand, RNAz p=0.763512

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               635-804, gnl|bosTau2|chr13 (9454914-9454746)
               

               
               635-804, gnl|Hg17|chr6 (116881362-116881178)
               

               
               635-804, gnl|Mm7|chr14 (68637212-68637027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               635-804, gnl|bosTau2|chr13 (9454914-9454746)
               

               
               635-804, gnl|Hg17|chr6 (116881362-116881178)
               

               
               635-804, gnl|Mm7|chr14 (68637212-68637027)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	635-804, gnl\|bosTau2\|chr13 (9454914-9454746)
	635-804, gnl\|Hg17\|chr6 (116881362-116881178)
	635-804, gnl\|Mm7\|chr14 (68637212-68637027)