Non-Coding RNA Search

Ss1.1-Pig4-TMW8066E07.3

Sequence:


               
               CTGCCCCAGCCCAATCATGACCCAGAGCTGCAGACCCTCCAGCCCTGCCCTGGCCCCGGT
CCTACTGACCCTGCTGCTGGGCGGCCCCGCGCTGGCCTCGGAAATCGTGGGGGGCCGGCC
GGCCAGGCCACATGCATGGCCCTTCATGGCGTCCCTGCAGCGGCGCGGAAGCCACTTCTG
CGGCGGCACCCTCATAGCGCGGAACTTCGTCCTGTCGGCCGCGCACTGTCTGAACGGCTT
AAACTTTCGGTCCGTGCGCGTGGTTCTGGGGGCACACAACCTGCGACGGGGCGAGTCCAC
CAGGCAGAAGTTCAGAATCCAGCGGGTCTTTGAAAACGGCTTCGACCCCATGACCCTGCG
GAACGACATTGTGGTTCTCCAGCTCAACAGATTTGCCTTCATCAATAGCAACGTGCAGGT
GGCCCAGCTACCTGCTCAGGACCAAGGCGTGGGGGAAGGGGTGCGATGTCTGGCCATGGG
CTGGGGCCAGCTGGGCACGAACCGGCCACCGCCCCGAGTCCTGCAGCAGCTCAATGTGAC
TGTGGTGACAGCCCTCTGCCGCCCCACCAATGTGTGCACCCTGGTACCAGGCCGGCAGGC
TGGCATCTGCTTTGGGGACTCCGGCGGGCCCTTGGTCTGCAATGGGCTGGTCCAGGGGAT
AGATTCCTTCATCCGGGGGGGCTGTGGCTCTGGGCTCTTCCCAGACACCTTTGCCTCCAC
CGCCAAGTTTGCAGACTGGATCAACTCCATTATCCGACGCTATGGTGATAATGACAGCCC
GCCTCTCCACCCCAGGATCCCTGTGGGCAGGACCCTCTAGAAAGGCGGCCCCTGTTACCC
CACTCCCCCCGGCTGGGCTCTTCCCATGCAGCATCATGCAGCATCTGACACAATAAAAAC
CCTGTTTTGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCCAGCCCAATCATGACCCAGAGCTGCAGACCCTCCAGCCCTGCCCTGGCCCCGGT
CCTACTGACCCTGCTGCTGGGCGGCCCCGCGCTGGCCTCGGAAATCGTGGGGGGCCGGCC
GGCCAGGCCACATGCATGGCCCTTCATGGCGTCCCTGCAGCGGCGCGGAAGCCACTTCTG
CGGCGGCACCCTCATAGCGCGGAACTTCGTCCTGTCGGCCGCGCACTGTCTGAACGGCTT
AAACTTTCGGTCCGTGCGCGTGGTTCTGGGGGCACACAACCTGCGACGGGGCGAGTCCAC
CAGGCAGAAGTTCAGAATCCAGCGGGTCTTTGAAAACGGCTTCGACCCCATGACCCTGCG
GAACGACATTGTGGTTCTCCAGCTCAACAGATTTGCCTTCATCAATAGCAACGTGCAGGT
GGCCCAGCTACCTGCTCAGGACCAAGGCGTGGGGGAAGGGGTGCGATGTCTGGCCATGGG
CTGGGGCCAGCTGGGCACGAACCGGCCACCGCCCCGAGTCCTGCAGCAGCTCAATGTGAC
TGTGGTGACAGCCCTCTGCCGCCCCACCAATGTGTGCACCCTGGTACCAGGCCGGCAGGC
TGGCATCTGCTTTGGGGACTCCGGCGGGCCCTTGGTCTGCAATGGGCTGGTCCAGGGGAT
AGATTCCTTCATCCGGGGGGGCTGTGGCTCTGGGCTCTTCCCAGACACCTTTGCCTCCAC
CGCCAAGTTTGCAGACTGGATCAACTCCATTATCCGACGCTATGGTGATAATGACAGCCC
GCCTCTCCACCCCAGGATCCCTGTGGGCAGGACCCTCTAGAAAGGCGGCCCCTGTTACCC
CACTCCCCCCGGCTGGGCTCTTCCCATGCAGCATCATGCAGCATCTGACACAATAAAAAC
CCTGTTTTGTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884575|ref|XP_593942.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884575|ref|XP_593942.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               83-238, gnl|bosTau2|chr7 (29291859-29291704)
               

               
               83-238, gnl|Hg17|chr19 (803875-804030)
               

               
               83-238, gnl|Mm7|chr10 (79666730-79666885)
               


               
               242-382, gnl|bosTau2|chr7 (29291538-29291398)
               

               
               242-382, gnl|Hg17|chr19 (804263-804403)
               

               
               242-382, gnl|Mm7|chr10 (79667001-79667141)
               


               
               614-901, gnl|bosTau2|chr7 (29290179-29289886)
               

               
               614-901, gnl|Hg17|chr19 (806958-807228)
               

               
               614-901, gnl|Mm7|chr10 (79667933-79668219)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-238, gnl|bosTau2|chr7 (29291859-29291704)
               

               
               83-238, gnl|Hg17|chr19 (803875-804030)
               

               
               83-238, gnl|Mm7|chr10 (79666730-79666885)
               


               
               242-382, gnl|bosTau2|chr7 (29291538-29291398)
               

               
               242-382, gnl|Hg17|chr19 (804263-804403)
               

               
               242-382, gnl|Mm7|chr10 (79667001-79667141)
               


               
               614-901, gnl|bosTau2|chr7 (29290179-29289886)
               

               
               614-901, gnl|Hg17|chr19 (806958-807228)
               

               
               614-901, gnl|Mm7|chr10 (79667933-79668219)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.297974)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.297974)

	83-238, gnl\|bosTau2\|chr7 (29291859-29291704)
	83-238, gnl\|Hg17\|chr19 (803875-804030)
	83-238, gnl\|Mm7\|chr10 (79666730-79666885)

	242-382, gnl\|bosTau2\|chr7 (29291538-29291398)
	242-382, gnl\|Hg17\|chr19 (804263-804403)
	242-382, gnl\|Mm7\|chr10 (79667001-79667141)

	614-901, gnl\|bosTau2\|chr7 (29290179-29289886)
	614-901, gnl\|Hg17\|chr19 (806958-807228)
	614-901, gnl\|Mm7\|chr10 (79667933-79668219)