Non-Coding RNA Search

Ss1.1-Pig4-TMW8066E10.3

Sequence:


               
               CCAGGTTCAAAGGTCAAGTGCCGATCTATGAACCAGTGTACAAAAAAAAAAAAATAAAAA
AAATTTTAAAAATCCAGGTGTTTGAAGGAAAGATGCTCCATTGTGAATAAAGAGCTCGCA
CCAGGTCCTAAGCCCTAGGAAGACACCTGGCCCTCTAATGCCTTGTTTAAATTTACATTT
TCCTTGAGGGAAAGGATATGCTAACCATTCCTGATAAGGGTTGGTCAGGGCTTAGGGAGG
GGGCAGGAATATTGGGGAGAAAAAAAATCTGATCATTCCTCAGTGCTACCCATTTCTGTC
CTGTGTGGGCTGCTTAGCTAGACAGCAGGAGAATAAAGTACACCGAGAACCATAATGAAA
ACAAAACCTTCCGTGTGTTTTGTCATGTTTTGTTCCAGGGAAGCAGTTGACAAGTGCTGT
TCTTAAAGCTTTCTCCCAGATCCATTCAGTGATGGAGAGGAGGAAAATGGGCTGGTTGGA
TTGTGGTCTTGGTGCCTCGCAGTTACTCTGCACTGGTTATGCATTTATTAGCCGCCTCTT
TTCTAGTTACCTGTGGCTAGTGGGCCTTCCCACTGGGTATTTGTCCTTAATCAATTATAC
CACCTAAGGCAACTGGATGCAAAATGCATTCTGTCCACTCACGTCTGGGCCTTCCCTACT
CTAGGCACGTTCCTTCAAGAATGTAGTTACCGTCTTGGGAAGATGTCAGTGCAAATGGGA
AGAAAATAGGCATCGGACCAGGCTTTGGTTTGCCACAAGTGGCAGCTGCCTATATCAATT
ACGTTTATTAATTTTGCTTTTCATTTTCTCAGCTCCCCTCTGCTGAAATGTTAAGATTTT
GGCTGTCAGAGGCAACTGTGACATTGCCTTAGGGACTTGTGGAGGAGGGGAATTGCTCAG
TGTAGTATTTTCATTTCACAACCAAGTAATCTAGTCACTCATATGGAAGAAGTGTGTTAG
TCCAACTTTAAAAGAAATCCAAACTCCATCAGCTTTTGATAGCATCTTGGTTTTTGAAAC
AACTTCAATCTGTAATTGGCATTCAGAATGCCCTTGGCATGCCAGTCTGTGATGGCAGTA
AAGACCTGTGAAAACACTTGAGCCCAACTTTATTAACCAAAACTGATACCACCACCTTTA
TCTTCTAAATAAAGTCCGTTTTATTTTTATTTTCAATATTTTGCCGCTTCATTTTTGGTT
CCAGATGGTGTCACCTCCTTGGAGGTGAAATGAGTGGTTTGAAAGAAGCTGGAGCGTGTG
GTGATAGATGTGTGAGTTGGGGAAAGGAAGACACATCTGTCTTTAAAGTGGACTCTACGT
AGTGCAATGGGAAGTGAGTGAAAAACAATTTCCTGCAAGTGAGGTAGTGAAATGGGGCTA
CGTGGAGGTTCCTGTCCAGAGAGAGATTCCAAAACTGCTGGAAATTGTCCTCTGTCTTTT
CTTGGGCTAATGATCTGATCTGTATAATGGCTCATCCAAAGGTTGGCTTTTTAGTTTGTG
TATTTAATTTCTTCTACCCCTGCCCTCAAACTTGTAGAGGAAAGAACTTATTTAAAAAAC
TGGGTCCTTTCCTTTAGCCTCCTGTTGTTAGTTCAGTGACACCTGCAGGCTACTCTATGA
AAAATGCACTTTCTTTGTTTATGTTGGGTGAGTAAAATGAGGGCTGACCTTCATTTTCCT
ACCTTAGCCTCCACGTGGCCTTTCACCATTTCTGATCGCACACCCCTGTCAGTAAGAAAT
TTTTGATCATGCATATCCCCATGTGTTGATAAATTATATACCTGTACTACTGTACCCTAT
ATGTTGTGTAATCAGACACAAAAATAGATATTAAAAAGCAATTATATGAAAAATAAATAA
AAGTAGGAGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGTTCAAAGGTCAAGTGCCGATCTATGAACCAGTGTACAAAAAAAAAAAAATAAAAA
AAATTTTAAAAATCCAGGTGTTTGAAGGAAAGATGCTCCATTGTGAATAAAGAGCTCGCA
CCAGGTCCTAAGCCCTAGGAAGACACCTGGCCCTCTAATGCCTTGTTTAAATTTACATTT
TCCTTGAGGGAAAGGATATGCTAACCATTCCTGATAAGGGTTGGTCAGGGCTTAGGGAGG
GGGCAGGAATATTGGGGAGAAAAAAAATCTGATCATTCCTCAGTGCTACCCATTTCTGTC
CTGTGTGGGCTGCTTAGCTAGACAGCAGGAGAATAAAGTACACCGAGAACCATAATGAAA
ACAAAACCTTCCGTGTGTTTTGTCATGTTTTGTTCCAGGGAAGCAGTTGACAAGTGCTGT
TCTTAAAGCTTTCTCCCAGATCCATTCAGTGATGGAGAGGAGGAAAATGGGCTGGTTGGA
TTGTGGTCTTGGTGCCTCGCAGTTACTCTGCACTGGTTATGCATTTATTAGCCGCCTCTT
TTCTAGTTACCTGTGGCTAGTGGGCCTTCCCACTGGGTATTTGTCCTTAATCAATTATAC
CACCTAAGGCAACTGGATGCAAAATGCATTCTGTCCACTCACGTCTGGGCCTTCCCTACT
CTAGGCACGTTCCTTCAAGAATGTAGTTACCGTCTTGGGAAGATGTCAGTGCAAATGGGA
AGAAAATAGGCATCGGACCAGGCTTTGGTTTGCCACAAGTGGCAGCTGCCTATATCAATT
ACGTTTATTAATTTTGCTTTTCATTTTCTCAGCTCCCCTCTGCTGAAATGTTAAGATTTT
GGCTGTCAGAGGCAACTGTGACATTGCCTTAGGGACTTGTGGAGGAGGGGAATTGCTCAG
TGTAGTATTTTCATTTCACAACCAAGTAATCTAGTCACTCATATGGAAGAAGTGTGTTAG
TCCAACTTTAAAAGAAATCCAAACTCCATCAGCTTTTGATAGCATCTTGGTTTTTGAAAC
AACTTCAATCTGTAATTGGCATTCAGAATGCCCTTGGCATGCCAGTCTGTGATGGCAGTA
AAGACCTGTGAAAACACTTGAGCCCAACTTTATTAACCAAAACTGATACCACCACCTTTA
TCTTCTAAATAAAGTCCGTTTTATTTTTATTTTCAATATTTTGCCGCTTCATTTTTGGTT
CCAGATGGTGTCACCTCCTTGGAGGTGAAATGAGTGGTTTGAAAGAAGCTGGAGCGTGTG
GTGATAGATGTGTGAGTTGGGGAAAGGAAGACACATCTGTCTTTAAAGTGGACTCTACGT
AGTGCAATGGGAAGTGAGTGAAAAACAATTTCCTGCAAGTGAGGTAGTGAAATGGGGCTA
CGTGGAGGTTCCTGTCCAGAGAGAGATTCCAAAACTGCTGGAAATTGTCCTCTGTCTTTT
CTTGGGCTAATGATCTGATCTGTATAATGGCTCATCCAAAGGTTGGCTTTTTAGTTTGTG
TATTTAATTTCTTCTACCCCTGCCCTCAAACTTGTAGAGGAAAGAACTTATTTAAAAAAC
TGGGTCCTTTCCTTTAGCCTCCTGTTGTTAGTTCAGTGACACCTGCAGGCTACTCTATGA
AAAATGCACTTTCTTTGTTTATGTTGGGTGAGTAAAATGAGGGCTGACCTTCATTTTCCT
ACCTTAGCCTCCACGTGGCCTTTCACCATTTCTGATCGCACACCCCTGTCAGTAAGAAAT
TTTTGATCATGCATATCCCCATGTGTTGATAAATTATATACCTGTACTACTGTACCCTAT
ATGTTGTGTAATCAGACACAAAAATAGATATTAAAAAGCAATTATATGAAAAATAAATAA
AAGTAGGAGTTC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               40-261, - strand, RNAz p=0.985053
               

               
               806-915, - strand, RNAz p=0.979759
               

               
               1108-1372, + strand, RNAz p=0.98034

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-261, - strand, RNAz p=0.985053
               

               
               806-915, - strand, RNAz p=0.979759
               

               
               1108-1372, + strand, RNAz p=0.98034

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1515, gnl|bosTau2|chr19 (32579493-32577962)
               

               
               1-1515, gnl|Hg17|chr17 (43116674-43118501)
               


               
               1517-1872, gnl|bosTau2|chr19 (32577938-32577578)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1515, gnl|bosTau2|chr19 (32579493-32577962)
               

               
               1-1515, gnl|Hg17|chr17 (43116674-43118501)
               


               
               1517-1872, gnl|bosTau2|chr19 (32577938-32577578)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               eye (0.511509)
               

               
               ece (0.45861)
               

               
               spc (0.453463)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               ece (0.45861)
               

               
               spc (0.453463)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	40-261, - strand, RNAz p=0.985053
	806-915, - strand, RNAz p=0.979759
	1108-1372, + strand, RNAz p=0.98034

	1-1515, gnl\|bosTau2\|chr19 (32579493-32577962)
	1-1515, gnl\|Hg17\|chr17 (43116674-43118501)

	1517-1872, gnl\|bosTau2\|chr19 (32577938-32577578)

	eye (0.511509)
	ece (0.45861)
	spc (0.453463)
	cte (0.29274)
	fce (0.271592)
	ese (0.253004)
	bla (0.248694)
	aor (0.195274)
	gul (0.177588)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	nca (0.136874)
	ssp (0.13552)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	ldo (0.0970026)