Non-Coding RNA Search

Ss1.1-Pig4-TMW8066E15.3

Sequence:


               
               GCGGCCGCTGGCAGCGTTGGGGGTGTCCGGTACTTCATCTGTCCTCCCAAGCAGGGTCTC
TTTGCCTCTGTGTCCAAGATCTCCAAGGCAGTGGATGCACCCCCCTCATCTGTCACCTCC
ACACCTCGGACTCCCCGGATGGNCTTCTCCCGTGTCACTGGAAAAGGCCGCAGGGAACAC
AAAGGCAAGAAGAAGCCCACGTCATCCCCATCTGCAGGCAGCCTGCAGCAGCGCGAAGGA
GCCAAGGCTGAGGTTGGAGACCAAGTCCTCGTCGCAGGCCAGAAGCAAGGGATTGTGCGC
TTCTACGGGAAGACAGACTTTGCCCCAGGCTACTGGTATGGCATTGAGCTAGACCAGCCC
ACTGGCAAGCACGATGGCTCCATCTTCGGTGTCCGGTACTTCACCTGCCCCCCGAAGCAT
GGAGTCTTTGCACCAGCATCTCGAATTCAGAGAATTGGTGGATCCACTGACCCCCCTGGG
GACAATGTTGGAGCCAAAAAAGTACATCAAGTGACAATGACGCAGCCCAAACGCAACTTC
ACAACAGTACGGACCCCAAAGGACATCGCATCAGAGAACTCTATCTCCAGGTTGCTCTTC
TGCTGCTGGTTTCCCTGGATGCTGAGGGCGGAGATGCAGTCTTAGAGGCCCTGGACATCC
GATGACGAGACACAGAGGCCCCTCTAGCGTCTCCTGACACACGGAGCCCCTGAGTTACCC
TGAGATAGAGATTCCCAGTAACACATCCAGAATAGAGACCCCCGTTAGCCAGCCCTCGAT
CACTGAGGCCCCATTATTAACAGATGTCCCCCATTGATAACCCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGGCAGCGTTGGGGGTGTCCGGTACTTCATCTGTCCTCCCAAGCAGGGTCTC
TTTGCCTCTGTGTCCAAGATCTCCAAGGCAGTGGATGCACCCCCCTCATCTGTCACCTCC
ACACCTCGGACTCCCCGGATGGNCTTCTCCCGTGTCACTGGAAAAGGCCGCAGGGAACAC
AAAGGCAAGAAGAAGCCCACGTCATCCCCATCTGCAGGCAGCCTGCAGCAGCGCGAAGGA
GCCAAGGCTGAGGTTGGAGACCAAGTCCTCGTCGCAGGCCAGAAGCAAGGGATTGTGCGC
TTCTACGGGAAGACAGACTTTGCCCCAGGCTACTGGTATGGCATTGAGCTAGACCAGCCC
ACTGGCAAGCACGATGGCTCCATCTTCGGTGTCCGGTACTTCACCTGCCCCCCGAAGCAT
GGAGTCTTTGCACCAGCATCTCGAATTCAGAGAATTGGTGGATCCACTGACCCCCCTGGG
GACAATGTTGGAGCCAAAAAAGTACATCAAGTGACAATGACGCAGCCCAAACGCAACTTC
ACAACAGTACGGACCCCAAAGGACATCGCATCAGAGAACTCTATCTCCAGGTTGCTCTTC
TGCTGCTGGTTTCCCTGGATGCTGAGGGCGGAGATGCAGTCTTAGAGGCCCTGGACATCC
GATGACGAGACACAGAGGCCCCTCTAGCGTCTCCTGACACACGGAGCCCCTGAGTTACCC
TGAGATAGAGATTCCCAGTAACACATCCAGAATAGAGACCCCCGTTAGCCAGCCCTCGAT
CACTGAGGCCCCATTATTAACAGATGTCCCCCATTGATAACCCCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7TNI1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7TNI1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               618-736, - strand, RNAz p=0.506137

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               618-736, - strand, RNAz p=0.506137

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               183-329, gnl|bosTau2|chr18 (41809159-41809013)
               

               
               183-329, gnl|Hg17|chr19 (41200735-41200589)
               

               
               183-329, gnl|Mm7|chr7 (27245025-27245171)
               


               
               584-828, gnl|bosTau2|chr18 (41807557-41807320)
               

               
               584-828, gnl|Hg17|chr19 (41198964-41198721)
               

               
               584-828, gnl|Mm7|chr7 (27248187-27248431)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-329, gnl|bosTau2|chr18 (41809159-41809013)
               

               
               183-329, gnl|Hg17|chr19 (41200735-41200589)
               

               
               183-329, gnl|Mm7|chr7 (27245025-27245171)
               


               
               584-828, gnl|bosTau2|chr18 (41807557-41807320)
               

               
               584-828, gnl|Hg17|chr19 (41198964-41198721)
               

               
               584-828, gnl|Mm7|chr7 (27248187-27248431)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	183-329, gnl\|bosTau2\|chr18 (41809159-41809013)
	183-329, gnl\|Hg17\|chr19 (41200735-41200589)
	183-329, gnl\|Mm7\|chr7 (27245025-27245171)

	584-828, gnl\|bosTau2\|chr18 (41807557-41807320)
	584-828, gnl\|Hg17\|chr19 (41198964-41198721)
	584-828, gnl\|Mm7\|chr7 (27248187-27248431)