Ss1.1-Pig4-TMW8066E19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTAAGATGGCGCCGGCGGAAGGGGCGGAGTGCCGCTGGGTGGCGATGGCAGCGTCAAGG CTGGAGCTGAACCTGGTGCGGCTCTTGTGCCGCTGCGAGGCGATGGCAGCAGAGAAACGG GACCCGGACGAGTGGCGTTTAGAAAAGTACGTGGGAGCCCTTGAAGACATGCTGCAGGCC CTGAAAGCGCAGGCGAGCAAACCGGCGTCCGAGGTGATCAATGAATATTCTCGCAAAGTA GATTTTCTGAAGGGGATGCTGCAGGCAGAGAAGCTGACCTCCTCCTCAGAGAAGGCACTA GCCAACCAGTTCCTGGCCCCTGGCCGAGTGCCAACTACGGCCAGGGAACGGGTACCAGCC ACAAAGACAGTGCACCTACAGTCACGGGCACGGTACACCAGTGAGATGCGGAGTGAGCTG CTAGGCACGGACTCTACTGAAGAGCCTGAACTGAATGTGAGAAAGAGAACTGGGGCAGCA GGGCCCAGGCCAGAGGATGAGAAGCAGTCAGCAGCAGAGCTAGACCTTGTCCTGCAGCGA CACCAGGACCTCCAGGAAAAGTTGGCAGAGGAGATGCTAGGCCTGGCCCGGAGCCTCAAG ACCAACACACTGGCTGCCCAGAGTGTCATCAAGAAGGATAACCAGACCCTGTCACACTCA CTCAAGATGGCTGACCAGAATCTAGAGAAGCTAAAGACAGAATCTGAGCGGCTGGAGCAG CACACACAGAAGTCAGTCAACTGGCTGCTCTGGGCCATGCTTATTATTGTCTGCTTCATC TTCATCAGCATGATCCTCTTCATCCGTATCATGCCCAAACTCAAATAAAGCCCTGGCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTAAGATGGCGCCGGCGGAAGGGGCGGAGTGCCGCTGGGTGGCGATGGCAGCGTCAAGG CTGGAGCTGAACCTGGTGCGGCTCTTGTGCCGCTGCGAGGCGATGGCAGCAGAGAAACGG GACCCGGACGAGTGGCGTTTAGAAAAGTACGTGGGAGCCCTTGAAGACATGCTGCAGGCC CTGAAAGCGCAGGCGAGCAAACCGGCGTCCGAGGTGATCAATGAATATTCTCGCAAAGTA GATTTTCTGAAGGGGATGCTGCAGGCAGAGAAGCTGACCTCCTCCTCAGAGAAGGCACTA GCCAACCAGTTCCTGGCCCCTGGCCGAGTGCCAACTACGGCCAGGGAACGGGTACCAGCC ACAAAGACAGTGCACCTACAGTCACGGGCACGGTACACCAGTGAGATGCGGAGTGAGCTG CTAGGCACGGACTCTACTGAAGAGCCTGAACTGAATGTGAGAAAGAGAACTGGGGCAGCA GGGCCCAGGCCAGAGGATGAGAAGCAGTCAGCAGCAGAGCTAGACCTTGTCCTGCAGCGA CACCAGGACCTCCAGGAAAAGTTGGCAGAGGAGATGCTAGGCCTGGCCCGGAGCCTCAAG ACCAACACACTGGCTGCCCAGAGTGTCATCAAGAAGGATAACCAGACCCTGTCACACTCA CTCAAGATGGCTGACCAGAATCTAGAGAAGCTAAAGACAGAATCTGAGCGGCTGGAGCAG CACACACAGAAGTCAGTCAACTGGCTGCTCTGGGCCATGCTTATTATTGTCTGCTTCATC TTCATCAGCATGATCCTCTTCATCCGTATCATGCCCAAACTCAAATAAAGCCCTGGCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 273-391, - strand, RNAz p=0.738639 | |
| 273-430, - strand, RNAz p=0.793128 | |
| 682-838, + strand, RNAz p=0.743692 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 273-391, - strand, RNAz p=0.738639 | |
| 273-430, - strand, RNAz p=0.793128 | |
| 682-838, + strand, RNAz p=0.743692 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC006005, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 2-147, gnl|bosTau2|chr7 (2851728-2851583) | |
| 2-147, gnl|Hg17|chr19 (17187171-17187316) | |
| 2-147, gnl|Mm7|chr8 (69834276-69834415) | |
| 273-430, gnl|bosTau2|chr7 (2850934-2850777) | |
| 273-430, gnl|canFam2|chr20 (48513617-48513439) | |
| 273-430, gnl|danRer3|chr22 (9507238-9507049) | |
| 273-430, gnl|echTel1|scaffold_310393 (3893-3713) | |
| 273-430, gnl|fr1|chrUn (73946133-73946328) | |
| 273-430, gnl|galGal2|chr28 (3451411-3451230) | |
| 273-430, gnl|hg17|chr19 (17187956-17188136) | |
| 273-430, gnl|Hg17|chr19 (17187974-17188131) | |
| 273-430, gnl|loxAfr1|scaffold_45803 (12631-12450) | |
| 273-430, gnl|mm7|chr8 (69834977-69835163) | |
| 273-430, gnl|Mm7|chr8 (69835001-69835158) | |
| 273-430, gnl|monDom2|scaffold_100 (4178823-4179005) | |
| 273-430, gnl|panTro1|chr20 (17880550-17880730) | |
| 273-430, gnl|rheMac2|chr19 (16765283-16765463) | |
| 273-430, gnl|rn3|chr16 (18529017-18529203) | |
| 273-430, gnl|tetNig1|chr1 (11483085-11483279) | |
| 273-430, gnl|xenTro1|scaffold_83 (111194-111356) | |
| 643-838, gnl|bosTau2|chr7 (2848977-2848782) | |
| 643-838, gnl|canFam2|chr20 (48511749-48511534) | |
| 643-838, gnl|danRer3|chr22 (9503139-9502940) | |
| 643-838, gnl|echTel1|scaffold_310393 (2212-2001) | |
| 643-838, gnl|fr1|chrUn (73947060-73947256) | |
| 643-838, gnl|galGal2|chr28 (3449011-3448809) | |
| 643-838, gnl|hg17|chr19 (17191423-17191638) | |
| 643-838, gnl|Hg17|chr19 (17191437-17191628) | |
| 643-838, gnl|loxAfr1|scaffold_45803 (10843-10624) | |
| 643-838, gnl|mm7|chr8 (69836556-69836757) | |
| 643-838, gnl|Mm7|chr8 (69836570-69836756) | |
| 643-838, gnl|monDom2|scaffold_100 (4185249-4185450) | |
| 643-838, gnl|panTro1|chr20 (17884003-17884218) | |
| 643-838, gnl|rheMac2|chr19 (16769148-16769363) | |
| 643-838, gnl|rn3|chr16 (18530777-18530991) | |
| 643-838, gnl|tetNig1|chr1 (11483927-11484135) | |
| 643-838, gnl|xenTro1|scaffold_83 (117383-117576) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-147, gnl|bosTau2|chr7 (2851728-2851583) | |
| 2-147, gnl|Hg17|chr19 (17187171-17187316) | |
| 2-147, gnl|Mm7|chr8 (69834276-69834415) | |
| 273-430, gnl|bosTau2|chr7 (2850934-2850777) | |
| 273-430, gnl|canFam2|chr20 (48513617-48513439) | |
| 273-430, gnl|danRer3|chr22 (9507238-9507049) | |
| 273-430, gnl|echTel1|scaffold_310393 (3893-3713) | |
| 273-430, gnl|fr1|chrUn (73946133-73946328) | |
| 273-430, gnl|galGal2|chr28 (3451411-3451230) | |
| 273-430, gnl|hg17|chr19 (17187956-17188136) | |
| 273-430, gnl|Hg17|chr19 (17187974-17188131) | |
| 273-430, gnl|loxAfr1|scaffold_45803 (12631-12450) | |
| 273-430, gnl|mm7|chr8 (69834977-69835163) | |
| 273-430, gnl|Mm7|chr8 (69835001-69835158) | |
| 273-430, gnl|monDom2|scaffold_100 (4178823-4179005) | |
| 273-430, gnl|panTro1|chr20 (17880550-17880730) | |
| 273-430, gnl|rheMac2|chr19 (16765283-16765463) | |
| 273-430, gnl|rn3|chr16 (18529017-18529203) | |
| 273-430, gnl|tetNig1|chr1 (11483085-11483279) | |
| 273-430, gnl|xenTro1|scaffold_83 (111194-111356) | |
| 643-838, gnl|bosTau2|chr7 (2848977-2848782) | |
| 643-838, gnl|canFam2|chr20 (48511749-48511534) | |
| 643-838, gnl|danRer3|chr22 (9503139-9502940) | |
| 643-838, gnl|echTel1|scaffold_310393 (2212-2001) | |
| 643-838, gnl|fr1|chrUn (73947060-73947256) | |
| 643-838, gnl|galGal2|chr28 (3449011-3448809) | |
| 643-838, gnl|hg17|chr19 (17191423-17191638) | |
| 643-838, gnl|Hg17|chr19 (17191437-17191628) | |
| 643-838, gnl|loxAfr1|scaffold_45803 (10843-10624) | |
| 643-838, gnl|mm7|chr8 (69836556-69836757) | |
| 643-838, gnl|Mm7|chr8 (69836570-69836756) | |
| 643-838, gnl|monDom2|scaffold_100 (4185249-4185450) | |
| 643-838, gnl|panTro1|chr20 (17884003-17884218) | |
| 643-838, gnl|rheMac2|chr19 (16769148-16769363) | |
| 643-838, gnl|rn3|chr16 (18530777-18530991) | |
| 643-838, gnl|tetNig1|chr1 (11483927-11484135) | |
| 643-838, gnl|xenTro1|scaffold_83 (117383-117576) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| elu (0.385356) | |
| duo (0.345602) | |
| ece (0.229305) | |
| nms (0.213858) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| fat (0.147427) | |
| che (0.136314) | |
| ute (0.132784) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| duo (0.345602) | |
| ece (0.229305) | |
| nms (0.213858) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| fat (0.147427) | |
| che (0.136314) | |
| ute (0.132784) |