Non-Coding RNA Search

Ss1.1-Pig4-TMW8066F01.3

Sequence:


               
               GCGCCCAACATTTCAGAGGAGTATTTACCTGCGCCACAAACACCTGAACGCATTGTTAAA
CTCAGAGCGGCCGCGGTTACCGGCATGCCTAAGAATAAAGGTAAAGGAGGTAAAAACAGG
CGCAGGGGTAAGAATGAGAATGAATCTGAAAAAAGAGAATTGGTGTTTAAAGAGGATGGA
CAAGAATATGCTCAGGTCATCAAAATGTTGGGAAATGGAAGATTGGAAGCAATGTGTTTT
GATGGTGTAAAGAGGTTATGTCATATCAGAGGAAAATTGAGAAAAAAGGTTTGGATAAAT
ACCTCAGATATTATATTGGTTGGTCTTCGTGATTATCAGGATAACAAAGCTGATGTAATT
TTAAAGTACAATGCAGATGAAGCTAGAAGTCTGAAGGCTTATGGGGAGCTTCCAGAACAT
GCAAAGATTAATGAAACTGATACATTTGGTCCTGGAGATGATGATGAAATCCAGTTTGAT
GACATTGGAGATGATGATGAAGACATTGATGATATCTAAATTGGTCTTACAAGAGTTTCT
GAGGATTATTCTACAGTTTGAATTTCGGTCATCACCTGTTAAGATTAAAACTTCATTCAA
GATGAATGTAGTCTTAAGACACACTGATTTATTTTAATTGTTTTAAAGTATTTATTATAT
TTCTTTAAACAACTGATGAAGCTGAATTATTTTAAGTAAAATGTTAACACTGTTCTTTTA
ATGTAATGGAATGTAGGGGTAAAAGACCATAATATCTACATTAAAACACTTGGAAGGGAG
AAAGAAGAAAAGAGATGCCTTTACCACTGTAATTAGTTTACTTCCAGTTCCTGGATGTTT
TAAATAAATTGCTGTATCATTATGGACTGTGATAAGCCCCAGTTCCTGCTATCTCTTTAC
AGAGTCTTTCTCTATATTCTGATTTGCCTAAATGTTCTCTTGAGATTTTTGATAAAATTT
AAGGAAAGCAGAAATCTGCATTTATATTAACAAAGGGGGCTGCTTTTGTATGTGTGTAGC
CAAGTGTATTTTTATACTAAGTTTGGTGACATATATTCTTTTCATCATTTGATGTTGCCA
CCCTCATAATAAAGACATTGCCAAAATGCAGTTTTTAGAACACGGGTTTGAGTAGTTATT
TTGATTTTGTGATATCAGTAGTTCAAAATTCAATGCTCGGTAACTGCTGTCTTAACATTG
CTTAATACTGAAAGTATTGATATATTTGATAAAAGTGTTTTTACTTAGTATATTTAGAAA
ATTTCTAAGATAAGATAACAAAATTAGATTCTTTTTTACTATAGAAAATAGATTATATAT
GTTTCATTTCAAAGGTCACATTGTAACCTATAGTTTTGAGTTTAAGAATGATTAAATTTA
AATGTATAAATGAAACTCTTAATTTCATAAAAAATTTTAGAAACTAAGCTTTCTTAAACT
ATCCCTTAGCTTAGAGTAAGAGGAAGGAACTACAGCTAAGAAATACAATAAAATTTTACA
TTGAGTATGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCCAACATTTCAGAGGAGTATTTACCTGCGCCACAAACACCTGAACGCATTGTTAAA
CTCAGAGCGGCCGCGGTTACCGGCATGCCTAAGAATAAAGGTAAAGGAGGTAAAAACAGG
CGCAGGGGTAAGAATGAGAATGAATCTGAAAAAAGAGAATTGGTGTTTAAAGAGGATGGA
CAAGAATATGCTCAGGTCATCAAAATGTTGGGAAATGGAAGATTGGAAGCAATGTGTTTT
GATGGTGTAAAGAGGTTATGTCATATCAGAGGAAAATTGAGAAAAAAGGTTTGGATAAAT
ACCTCAGATATTATATTGGTTGGTCTTCGTGATTATCAGGATAACAAAGCTGATGTAATT
TTAAAGTACAATGCAGATGAAGCTAGAAGTCTGAAGGCTTATGGGGAGCTTCCAGAACAT
GCAAAGATTAATGAAACTGATACATTTGGTCCTGGAGATGATGATGAAATCCAGTTTGAT
GACATTGGAGATGATGATGAAGACATTGATGATATCTAAATTGGTCTTACAAGAGTTTCT
GAGGATTATTCTACAGTTTGAATTTCGGTCATCACCTGTTAAGATTAAAACTTCATTCAA
GATGAATGTAGTCTTAAGACACACTGATTTATTTTAATTGTTTTAAAGTATTTATTATAT
TTCTTTAAACAACTGATGAAGCTGAATTATTTTAAGTAAAATGTTAACACTGTTCTTTTA
ATGTAATGGAATGTAGGGGTAAAAGACCATAATATCTACATTAAAACACTTGGAAGGGAG
AAAGAAGAAAAGAGATGCCTTTACCACTGTAATTAGTTTACTTCCAGTTCCTGGATGTTT
TAAATAAATTGCTGTATCATTATGGACTGTGATAAGCCCCAGTTCCTGCTATCTCTTTAC
AGAGTCTTTCTCTATATTCTGATTTGCCTAAATGTTCTCTTGAGATTTTTGATAAAATTT
AAGGAAAGCAGAAATCTGCATTTATATTAACAAAGGGGGCTGCTTTTGTATGTGTGTAGC
CAAGTGTATTTTTATACTAAGTTTGGTGACATATATTCTTTTCATCATTTGATGTTGCCA
CCCTCATAATAAAGACATTGCCAAAATGCAGTTTTTAGAACACGGGTTTGAGTAGTTATT
TTGATTTTGTGATATCAGTAGTTCAAAATTCAATGCTCGGTAACTGCTGTCTTAACATTG
CTTAATACTGAAAGTATTGATATATTTGATAAAAGTGTTTTTACTTAGTATATTTAGAAA
ATTTCTAAGATAAGATAACAAAATTAGATTCTTTTTTACTATAGAAAATAGATTATATAT
GTTTCATTTCAAAGGTCACATTGTAACCTATAGTTTTGAGTTTAAGAATGATTAAATTTA
AATGTATAAATGAAACTCTTAATTTCATAAAAAATTTTAGAAACTAAGCTTTCTTAAACT
ATCCCTTAGCTTAGAGTAAGAGGAAGGAACTACAGCTAAGAAATACAATAAAATTTTACA
TTGAGTATGTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6NU16_XENLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6NU16_XENLA

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               76-597, gnl|bosTau2|chr3 (63691091-63691625)
               

               
               76-597, gnl|Hg17|chr1 (16757865-16757333)
               

               
               76-597, gnl|Mm7|chr2 (15431323-15431854)
               


               
               658-1474, gnl|bosTau2|chrX (39161717-39162548)
               

               
               658-1474, gnl|Hg17|chrX (19905947-19905087)
               

               
               658-1474, gnl|Mm7|chrX (154159909-154161055)
               


               
               1081-1436, gnl|bosTau2|chr19 (7164191-7164553)
               

               
               1081-1436, gnl|Hg17|chrX (19905527-19905157)
               

               
               1081-1436, gnl|Mm7|chrX (154160656-154160983)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-597, gnl|bosTau2|chr3 (63691091-63691625)
               

               
               76-597, gnl|Hg17|chr1 (16757865-16757333)
               

               
               76-597, gnl|Mm7|chr2 (15431323-15431854)
               


               
               658-1474, gnl|bosTau2|chrX (39161717-39162548)
               

               
               658-1474, gnl|Hg17|chrX (19905947-19905087)
               

               
               658-1474, gnl|Mm7|chrX (154159909-154161055)
               


               
               1081-1436, gnl|bosTau2|chr19 (7164191-7164553)
               

               
               1081-1436, gnl|Hg17|chrX (19905527-19905157)
               

               
               1081-1436, gnl|Mm7|chrX (154160656-154160983)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               liv (0.292569)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               liv (0.292569)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	76-597, gnl\|bosTau2\|chr3 (63691091-63691625)
	76-597, gnl\|Hg17\|chr1 (16757865-16757333)
	76-597, gnl\|Mm7\|chr2 (15431323-15431854)

	658-1474, gnl\|bosTau2\|chrX (39161717-39162548)
	658-1474, gnl\|Hg17\|chrX (19905947-19905087)
	658-1474, gnl\|Mm7\|chrX (154159909-154161055)

	1081-1436, gnl\|bosTau2\|chr19 (7164191-7164553)
	1081-1436, gnl\|Hg17\|chrX (19905527-19905157)
	1081-1436, gnl\|Mm7\|chrX (154160656-154160983)

	bfe (0.449573)
	lin (0.436808)
	ret (0.3862)
	liv (0.292569)
	fty (0.17584)
	ton (0.1755)
	fco (0.157208)
	tbr (0.154178)
	ste (0.135208)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)