Ss1.1-Pig4-TMW8066F18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGCAGAAAGATGGCGGCGGCCGTGGCGGCCTCCGTCCTGCAGGGCACCTTCGGACGG CTGGTGTCTGCTTACAGCCGCAGCGTTCTGAGGACATCCAGGCCCGGGACAGCTCCCCCG TGGTCTGCTCCTCGGAGGCTCAGTTCGCAGCACACGTCGTCTCTTCGCGGGTGTGTTCCT AAAACATCACTGGGGTCACCGCCTTGGCCAGACATTGTCCTGCCAGACCCGGTTGAGGAG ACAAGACACCATGCAGAGGTGGTGGGGCAGGTGAACGAGCTGATCGCCGCCGGCCGGTAC GGCAGGCTCTTCGCCGTGGTGCACTTTGCCGGCCACCAGTGGAAGGTGACCGCTGAGGAC CTGATTTTAATTGAAAATGAGCTGGATGTCGCGTGCGGAGAGAGGATCCGGCTGGAAAAG GTCCTGCTGGTCGGGGCCGACAACTTCACGCTCCTGGGCAAGCCACTCCTCGGAAAGGAG CTGGTTCGAGTAGAAGCCACGGTCATTGAAAAGACAGAATCATGGCCAAAAATCAATATG AAATTTCAGAAAAGGAAAAACTACCAAAGGAAAAGAATCACCGTGAACCCACAGACCGTC CTCAGGATAAACTCCATCGAGATCGCTCCGTGTTTGTGCTGATCATCCAGCTGATGTTTA CGGAGAAGTGAAAATAAACTCGTTTTCCAGGAGACCCGGTTTCTGTGTTCCAATATAGAC ACTCTGATATAAAAAGCTCGGTCCCATCGTGGACTGCTGCAAATCGGGCGCCGTGACTGA GCTTATTCTCGGGGAGCAGGAGGAATTCAGGAAGAATCACAGGCACGGCCTCCCAGGGCT GGAGCCCCGCGCTTGTGTAAGAGGCCACTGCTTCTGGCCGCCCTCTCCCCCAGCGCCGCG GGCTGCAGACCCGAGCCGTCGACGCCAAGAGGGACAACCTGAATTCCATCGCTTGGGCAA CCCAGTCACCTGCTTCTAGCCGTTAGCTTTTCTAAGCAGCCGGGTTTCAGATCGTGGGTC TGGGCGCAGAGTCCCTGCTCGTGTCCTTTTGCCCCTTGTCGCAGCGCGTGTGGGCGACGC TGTGACTGTGGGCAGCACAGCAGCTCTGGGAACTGCATGCGAAGGGTCAGAGCAGAGGGA CCGGAGGAGTTTCCGTCTTGATCTTGAAGCCGGCGGCCTGTCCCGGAGGGTTGGGGACCG CCCAGACCTGTTTGGGGTGCATCAGGCGGGCAGCTAGCCTGTGTCAGAAGGGAGGGGTCG TGACACAGTGGCGGGGGTGGAGGGCAGATGGACGGGCTTGGGGTTGGGGGGCGCTCTCAG GGGCCCCAGGCCTCTGGTTCTGTGTCAGTCACAGAGGCCAGGCTTCCTGCAAGAGAATTG CTTTCAAGTAACAATAAAACCTTTTATCAAACAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGCAGAAAGATGGCGGCGGCCGTGGCGGCCTCCGTCCTGCAGGGCACCTTCGGACGG CTGGTGTCTGCTTACAGCCGCAGCGTTCTGAGGACATCCAGGCCCGGGACAGCTCCCCCG TGGTCTGCTCCTCGGAGGCTCAGTTCGCAGCACACGTCGTCTCTTCGCGGGTGTGTTCCT AAAACATCACTGGGGTCACCGCCTTGGCCAGACATTGTCCTGCCAGACCCGGTTGAGGAG ACAAGACACCATGCAGAGGTGGTGGGGCAGGTGAACGAGCTGATCGCCGCCGGCCGGTAC GGCAGGCTCTTCGCCGTGGTGCACTTTGCCGGCCACCAGTGGAAGGTGACCGCTGAGGAC CTGATTTTAATTGAAAATGAGCTGGATGTCGCGTGCGGAGAGAGGATCCGGCTGGAAAAG GTCCTGCTGGTCGGGGCCGACAACTTCACGCTCCTGGGCAAGCCACTCCTCGGAAAGGAG CTGGTTCGAGTAGAAGCCACGGTCATTGAAAAGACAGAATCATGGCCAAAAATCAATATG AAATTTCAGAAAAGGAAAAACTACCAAAGGAAAAGAATCACCGTGAACCCACAGACCGTC CTCAGGATAAACTCCATCGAGATCGCTCCGTGTTTGTGCTGATCATCCAGCTGATGTTTA CGGAGAAGTGAAAATAAACTCGTTTTCCAGGAGACCCGGTTTCTGTGTTCCAATATAGAC ACTCTGATATAAAAAGCTCGGTCCCATCGTGGACTGCTGCAAATCGGGCGCCGTGACTGA GCTTATTCTCGGGGAGCAGGAGGAATTCAGGAAGAATCACAGGCACGGCCTCCCAGGGCT GGAGCCCCGCGCTTGTGTAAGAGGCCACTGCTTCTGGCCGCCCTCTCCCCCAGCGCCGCG GGCTGCAGACCCGAGCCGTCGACGCCAAGAGGGACAACCTGAATTCCATCGCTTGGGCAA CCCAGTCACCTGCTTCTAGCCGTTAGCTTTTCTAAGCAGCCGGGTTTCAGATCGTGGGTC TGGGCGCAGAGTCCCTGCTCGTGTCCTTTTGCCCCTTGTCGCAGCGCGTGTGGGCGACGC TGTGACTGTGGGCAGCACAGCAGCTCTGGGAACTGCATGCGAAGGGTCAGAGCAGAGGGA CCGGAGGAGTTTCCGTCTTGATCTTGAAGCCGGCGGCCTGTCCCGGAGGGTTGGGGACCG CCCAGACCTGTTTGGGGTGCATCAGGCGGGCAGCTAGCCTGTGTCAGAAGGGAGGGGTCG TGACACAGTGGCGGGGGTGGAGGGCAGATGGACGGGCTTGGGGTTGGGGGGCGCTCTCAG GGGCCCCAGGCCTCTGGTTCTGTGTCAGTCACAGAGGCCAGGCTTCCTGCAAGAGAATTG CTTTCAAGTAACAATAAAACCTTTTATCAAACAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1293-1405, + strand, RNAz p=0.508905 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1293-1405, + strand, RNAz p=0.508905 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 2-107, gnl|bosTau2|chr29 (41781701-41781806) | |
| 2-107, gnl|canFam2|chr18 (52116900-52116682) | |
| 2-107, gnl|dasNov1|scaffold_185684 (3939-3675) | |
| 2-107, gnl|hg17|chr11 (68427738-68427975) | |
| 2-107, gnl|Hg17|chr11 (68427870-68427772) | |
| 2-107, gnl|loxAfr1|scaffold_21589 (36832-37076) | |
| 2-107, gnl|mm7|chr19 (3178008-3177692) | |
| 2-107, gnl|Mm7|chr19 (3177860-3177972) | |
| 2-107, gnl|monDom2|scaffold_182 (174934-175153) | |
| 2-107, gnl|panTro1|chr9 (69483965-69484217) | |
| 2-107, gnl|rheMac2|chr14 (5834258-5833989) | |
| 2-107, gnl|rn3|chr1 (205969082-205968755) | |
| 249-422, gnl|bosTau2|chr29 (41788295-41788468) | |
| 249-422, gnl|canFam2|chr18 (52124525-52124657) | |
| 249-422, gnl|canFam2|chr18 (52124671-52124486) | |
| 249-422, gnl|danRer3|chr1 (40652226-40652044) | |
| 249-422, gnl|dasNov1|scaffold_36770 (8015-8146) | |
| 249-422, gnl|dasNov1|scaffold_36770 (8159-7980) | |
| 249-422, gnl|echTel1|scaffold_90675 (1532-1396) | |
| 249-422, gnl|echTel1|scaffold_90675 (1391-1567) | |
| 249-422, gnl|hg17|chr11 (68420547-68420729) | |
| 249-422, gnl|Hg17|chr11 (68420730-68420557) | |
| 249-422, gnl|hg17|chr12 (66823389-66823523) | |
| 249-422, gnl|loxAfr1|scaffold_21589 (31541-31405) | |
| 249-422, gnl|loxAfr1|scaffold_21589 (31397-31576) | |
| 249-422, gnl|mm7|chr19 (3181856-3181676) | |
| 249-422, gnl|Mm7|chr19 (3181673-3181846) | |
| 249-422, gnl|mm7|chr9 (57510920-57511052) | |
| 249-422, gnl|monDom2|scaffold_182 (167332-167505) | |
| 249-422, gnl|monDom2|scaffold_19 (8870097-8870221) | |
| 249-422, gnl|panTro1|chr10 (68354914-68355048) | |
| 249-422, gnl|panTro1|chr9 (69476744-69476926) | |
| 249-422, gnl|rheMac2|chr11 (65131700-65131836) | |
| 249-422, gnl|rheMac2|chr14 (5842107-5841925) | |
| 249-422, gnl|rn3|chr1 (205973547-205973675) | |
| 249-422, gnl|rn3|chr1 (205973688-205973508) | |
| 249-422, gnl|tetNig1|chr18 (10033877-10033998) | |
| 249-422, gnl|tetNig1|chr18 (10033999-10033828) | |
| 473-577, gnl|bosTau2|chr29 (41790368-41790472) | |
| 473-577, gnl|canFam2|chr18 (52128033-52128132) | |
| 473-577, gnl|canFam2|chr18 (52128153-52128033) | |
| 473-577, gnl|danRer3|chr1 (40654537-40654426) | |
| 473-577, gnl|dasNov1|scaffold_36770 (10735-10839) | |
| 473-577, gnl|dasNov1|scaffold_36770 (10855-10735) | |
| 473-577, gnl|hg17|chr11 (68416920-68417040) | |
| 473-577, gnl|Hg17|chr11 (68417038-68416934) | |
| 473-577, gnl|hg17|chr12 (66823573-66823678) | |
| 473-577, gnl|mm7|chr19 (3183909-3183789) | |
| 473-577, gnl|Mm7|chr19 (3183789-3183893) | |
| 473-577, gnl|mm7|chr9 (57511102-57511207) | |
| 473-577, gnl|monDom2|scaffold_182 (159581-159701) | |
| 473-577, gnl|monDom2|scaffold_19 (8870271-8870376) | |
| 473-577, gnl|panTro1|chr10 (68355098-68355203) | |
| 473-577, gnl|panTro1|chr9 (69473132-69473252) | |
| 473-577, gnl|rheMac2|chr11 (65131886-65131991) | |
| 473-577, gnl|rheMac2|chr14 (5845937-5845817) | |
| 473-577, gnl|rn3|chr1 (205975164-205975268) | |
| 473-577, gnl|rn3|chr1 (205975284-205975164) | |
| 473-577, gnl|tetNig1|chr18 (10034048-10034153) | |
| 473-577, gnl|tetNig1|chr18 (10034153-10034048) | |
| 578-802, gnl|bosTau2|chr29 (41791554-41791782) | |
| 578-802, gnl|Hg17|chr11 (68415439-68415239) | |
| 1214-1405, gnl|bosTau2|chr29 (41792229-41792426) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-107, gnl|bosTau2|chr29 (41781701-41781806) | |
| 2-107, gnl|canFam2|chr18 (52116900-52116682) | |
| 2-107, gnl|dasNov1|scaffold_185684 (3939-3675) | |
| 2-107, gnl|hg17|chr11 (68427738-68427975) | |
| 2-107, gnl|Hg17|chr11 (68427870-68427772) | |
| 2-107, gnl|loxAfr1|scaffold_21589 (36832-37076) | |
| 2-107, gnl|mm7|chr19 (3178008-3177692) | |
| 2-107, gnl|Mm7|chr19 (3177860-3177972) | |
| 2-107, gnl|monDom2|scaffold_182 (174934-175153) | |
| 2-107, gnl|panTro1|chr9 (69483965-69484217) | |
| 2-107, gnl|rheMac2|chr14 (5834258-5833989) | |
| 2-107, gnl|rn3|chr1 (205969082-205968755) | |
| 249-422, gnl|bosTau2|chr29 (41788295-41788468) | |
| 249-422, gnl|canFam2|chr18 (52124525-52124657) | |
| 249-422, gnl|canFam2|chr18 (52124671-52124486) | |
| 249-422, gnl|danRer3|chr1 (40652226-40652044) | |
| 249-422, gnl|dasNov1|scaffold_36770 (8015-8146) | |
| 249-422, gnl|dasNov1|scaffold_36770 (8159-7980) | |
| 249-422, gnl|echTel1|scaffold_90675 (1532-1396) | |
| 249-422, gnl|echTel1|scaffold_90675 (1391-1567) | |
| 249-422, gnl|hg17|chr11 (68420547-68420729) | |
| 249-422, gnl|Hg17|chr11 (68420730-68420557) | |
| 249-422, gnl|hg17|chr12 (66823389-66823523) | |
| 249-422, gnl|loxAfr1|scaffold_21589 (31541-31405) | |
| 249-422, gnl|loxAfr1|scaffold_21589 (31397-31576) | |
| 249-422, gnl|mm7|chr19 (3181856-3181676) | |
| 249-422, gnl|Mm7|chr19 (3181673-3181846) | |
| 249-422, gnl|mm7|chr9 (57510920-57511052) | |
| 249-422, gnl|monDom2|scaffold_182 (167332-167505) | |
| 249-422, gnl|monDom2|scaffold_19 (8870097-8870221) | |
| 249-422, gnl|panTro1|chr10 (68354914-68355048) | |
| 249-422, gnl|panTro1|chr9 (69476744-69476926) | |
| 249-422, gnl|rheMac2|chr11 (65131700-65131836) | |
| 249-422, gnl|rheMac2|chr14 (5842107-5841925) | |
| 249-422, gnl|rn3|chr1 (205973547-205973675) | |
| 249-422, gnl|rn3|chr1 (205973688-205973508) | |
| 249-422, gnl|tetNig1|chr18 (10033877-10033998) | |
| 249-422, gnl|tetNig1|chr18 (10033999-10033828) | |
| 473-577, gnl|bosTau2|chr29 (41790368-41790472) | |
| 473-577, gnl|canFam2|chr18 (52128033-52128132) | |
| 473-577, gnl|canFam2|chr18 (52128153-52128033) | |
| 473-577, gnl|danRer3|chr1 (40654537-40654426) | |
| 473-577, gnl|dasNov1|scaffold_36770 (10735-10839) | |
| 473-577, gnl|dasNov1|scaffold_36770 (10855-10735) | |
| 473-577, gnl|hg17|chr11 (68416920-68417040) | |
| 473-577, gnl|Hg17|chr11 (68417038-68416934) | |
| 473-577, gnl|hg17|chr12 (66823573-66823678) | |
| 473-577, gnl|mm7|chr19 (3183909-3183789) | |
| 473-577, gnl|Mm7|chr19 (3183789-3183893) | |
| 473-577, gnl|mm7|chr9 (57511102-57511207) | |
| 473-577, gnl|monDom2|scaffold_182 (159581-159701) | |
| 473-577, gnl|monDom2|scaffold_19 (8870271-8870376) | |
| 473-577, gnl|panTro1|chr10 (68355098-68355203) | |
| 473-577, gnl|panTro1|chr9 (69473132-69473252) | |
| 473-577, gnl|rheMac2|chr11 (65131886-65131991) | |
| 473-577, gnl|rheMac2|chr14 (5845937-5845817) | |
| 473-577, gnl|rn3|chr1 (205975164-205975268) | |
| 473-577, gnl|rn3|chr1 (205975284-205975164) | |
| 473-577, gnl|tetNig1|chr18 (10034048-10034153) | |
| 473-577, gnl|tetNig1|chr18 (10034153-10034048) | |
| 578-802, gnl|bosTau2|chr29 (41791554-41791782) | |
| 578-802, gnl|Hg17|chr11 (68415439-68415239) | |
| 1214-1405, gnl|bosTau2|chr29 (41792229-41792426) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fce (0.271592) | |
| tes (0.207814) | |
| col (0.195008) | |
| nco (0.161734) | |
| lun (0.150489) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ese (0.126502) | |
| cly (0.120642) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| tes (0.207814) | |
| col (0.195008) | |
| nco (0.161734) | |
| lun (0.150489) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ese (0.126502) | |
| cly (0.120642) | |
| med (0.116252) | |
| eje (0.0988338) |