Non-Coding RNA Search

Ss1.1-Pig4-TMW8066G23.3

Sequence:


               
               CTGCAAGCAGCCAAGTTCCGAGACAGGGCCCCAGATTTTGGTTTCTGTCTCCTGGGGAAG
TGTTGCTTCAGGGTGCTGCTTCTCCCTCCCTGTTTGAATCTGCAGATGGTGTTAGGCTGG
TGGGGCTCAGGGTCTGGAGTAGTCGCCTTTGTCCCTGTACTTGGTACAGAGCTGGCCCCT
CAGTTTAGATGTATTGACTGACTGGAGAGGAACAGCAGAAGCCACAATGATTCCTGTCCT
TGAGATTCTCCTTACCAGTGTGTTTTGGGAATTGAGACCAAGGCTTATGAAGACTTTTGG
CCCCCTGACACCCTGTGCCCCCAATTCTTCCTCTCCCAGATCCAATGAATTCCTAAGGTT
GGACAAGGCCAAGATTCCCCAATAAGAACCCAGGCCAAGAGCGCAGACCTCATTCAGAGA
GGGTATTTGGGACTGGGATACACGTAGATGCTTTAAAAGAGGACTGAAGCAGGTTTGGGA
GGGCTGGGCACCTACAGAGGGGGTGTGGGGGTGCAGAATTGCAGTGAGTGCTTCATCTTA
GCCTCTTGGATTAGACGCAAGAGGGCCACAAACAAAACCTAAGAAAAAGAAGGTGTGGAA
GAGAGCCACTTCACCCAGGGCAGACTGCATCTGGTGCCTGGGTGACAGCAAGTATAAACA
CCTGCCACTTCAATTCAAGGTGGGACAGACACAAGGCAGTGCTGGCACTGCCCTGTACCC
TCAGGTACTAACCCCAGGGCCCCACCAGGGTGGCTGAGGCTTTGCCAGGCCAGCAGTGCA
GTTTGACTTCCTGTACCCAATCCTACCTCCCTCTTTTTTTTCACAGGTGTTTATCCCTAA
TAAATATCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAAGCAGCCAAGTTCCGAGACAGGGCCCCAGATTTTGGTTTCTGTCTCCTGGGGAAG
TGTTGCTTCAGGGTGCTGCTTCTCCCTCCCTGTTTGAATCTGCAGATGGTGTTAGGCTGG
TGGGGCTCAGGGTCTGGAGTAGTCGCCTTTGTCCCTGTACTTGGTACAGAGCTGGCCCCT
CAGTTTAGATGTATTGACTGACTGGAGAGGAACAGCAGAAGCCACAATGATTCCTGTCCT
TGAGATTCTCCTTACCAGTGTGTTTTGGGAATTGAGACCAAGGCTTATGAAGACTTTTGG
CCCCCTGACACCCTGTGCCCCCAATTCTTCCTCTCCCAGATCCAATGAATTCCTAAGGTT
GGACAAGGCCAAGATTCCCCAATAAGAACCCAGGCCAAGAGCGCAGACCTCATTCAGAGA
GGGTATTTGGGACTGGGATACACGTAGATGCTTTAAAAGAGGACTGAAGCAGGTTTGGGA
GGGCTGGGCACCTACAGAGGGGGTGTGGGGGTGCAGAATTGCAGTGAGTGCTTCATCTTA
GCCTCTTGGATTAGACGCAAGAGGGCCACAAACAAAACCTAAGAAAAAGAAGGTGTGGAA
GAGAGCCACTTCACCCAGGGCAGACTGCATCTGGTGCCTGGGTGACAGCAAGTATAAACA
CCTGCCACTTCAATTCAAGGTGGGACAGACACAAGGCAGTGCTGGCACTGCCCTGTACCC
TCAGGTACTAACCCCAGGGCCCCACCAGGGTGGCTGAGGCTTTGCCAGGCCAGCAGTGCA
GTTTGACTTCCTGTACCCAATCCTACCTCCCTCTTTTTTTTCACAGGTGTTTATCCCTAA
TAAATATCTTGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.683788
               

               
               397-514, - strand, RNAz p=0.897971
               

               
               664-852, - strand, RNAz p=0.999885

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.683788
               

               
               397-514, - strand, RNAz p=0.897971
               

               
               664-852, - strand, RNAz p=0.999885

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-852, gnl|bosTau2|chr13 (41962706-41961857)
               

               
               1-852, gnl|Hg17|chr20 (258063-258860)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr13 (41962706-41961857)
               

               
               1-852, gnl|Hg17|chr20 (258063-258860)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	1-119, - strand, RNAz p=0.683788
	397-514, - strand, RNAz p=0.897971
	664-852, - strand, RNAz p=0.999885

	1-852, gnl\|bosTau2\|chr13 (41962706-41961857)
	1-852, gnl\|Hg17\|chr20 (258063-258860)