Non-Coding RNA Search

Ss1.1-Pig4-TMW8066H17.3

Sequence:


               
               AAAGGATTCCTGTAAGATCCCTCATTATTATAGAATCATAAAATTTTCAAGCTGTTATAC
CTTTGATATAATGTAATATTTTCACTTTTTAGAGGAGGAACCTACATAGAGAGAGAGGAG
AAACTATTACCCATGACCACACAGCCAGTTAGTGTTCAGTTGGTACTAGACTAGATTCCA
TCCAGATATCCTGACTCATGGTAGTTAAATAATATGTAGAAAGGCAAATTTTTAAAGAAG
TATTTATTAATATATTCCTATGAAACATTTAAAAAATAACATAAAATGGTTAATTTTTCC
ATTCTAAAGTAAATGCTAAGCATGCTTATTAATGAAGCAGTACTTCTAATTAGTATATGA
CATTCTGAAGTTAATTAAAATTGTTACATTAAATGTGTCTTCCTTGGTGTAGCAGGGGAT
TTGGGGATTGGGATATATAGTAGAGTGCTTGCTTAAGCCTGGGAGCCCAAATTATAGCTA
TTTAAAGTAAGAAAAGAGACATGGCCATAGCTAAACTGAGCTATGTAAGGTGAGTGTTCA
TTCCCAGCAGACATAAAGGAATAAGGAAGCTTTCCTAACTTCCACCTCCCCAACCCCACC
CAGCCTCACCTCTCCATCTTGCACCCTGAAATGTGGAGACACATCAGTGCAAGGTGCCGG
CTCCTGCTTTTTTTATTTTGTCAAGAGGCAGTTTTAGGTAATCATTTGAGAGGTCCCTCG
CAGAGAGAGAGAAAAAAAATAGTGTTTGTATGTTTGTTTTTAAATAACCCAAGTACAGAT
TTATGTTGTATTCAGCACAATTGGAGTTCAGGTCTTTAATTTTAGAACATAAAGTGCCTG
CTGTTTTAAGCATTGACTTGTATAAAAAGAATTGCATGTCTCACTCCAGTAAGTTTATGG
GTTTTCTCATTTTCAGCTACTTGGCTCTTAATCATGTAAAGTGAAACATTAGTTTTGTTG
CATTTTATTACAGGTTCTTTGTTGCAATAAAAGATGCTGCTAAAATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGATTCCTGTAAGATCCCTCATTATTATAGAATCATAAAATTTTCAAGCTGTTATAC
CTTTGATATAATGTAATATTTTCACTTTTTAGAGGAGGAACCTACATAGAGAGAGAGGAG
AAACTATTACCCATGACCACACAGCCAGTTAGTGTTCAGTTGGTACTAGACTAGATTCCA
TCCAGATATCCTGACTCATGGTAGTTAAATAATATGTAGAAAGGCAAATTTTTAAAGAAG
TATTTATTAATATATTCCTATGAAACATTTAAAAAATAACATAAAATGGTTAATTTTTCC
ATTCTAAAGTAAATGCTAAGCATGCTTATTAATGAAGCAGTACTTCTAATTAGTATATGA
CATTCTGAAGTTAATTAAAATTGTTACATTAAATGTGTCTTCCTTGGTGTAGCAGGGGAT
TTGGGGATTGGGATATATAGTAGAGTGCTTGCTTAAGCCTGGGAGCCCAAATTATAGCTA
TTTAAAGTAAGAAAAGAGACATGGCCATAGCTAAACTGAGCTATGTAAGGTGAGTGTTCA
TTCCCAGCAGACATAAAGGAATAAGGAAGCTTTCCTAACTTCCACCTCCCCAACCCCACC
CAGCCTCACCTCTCCATCTTGCACCCTGAAATGTGGAGACACATCAGTGCAAGGTGCCGG
CTCCTGCTTTTTTTATTTTGTCAAGAGGCAGTTTTAGGTAATCATTTGAGAGGTCCCTCG
CAGAGAGAGAGAAAAAAAATAGTGTTTGTATGTTTGTTTTTAAATAACCCAAGTACAGAT
TTATGTTGTATTCAGCACAATTGGAGTTCAGGTCTTTAATTTTAGAACATAAAGTGCCTG
CTGTTTTAAGCATTGACTTGTATAAAAAGAATTGCATGTCTCACTCCAGTAAGTTTATGG
GTTTTCTCATTTTCAGCTACTTGGCTCTTAATCATGTAAAGTGAAACATTAGTTTTGTTG
CATTTTATTACAGGTTCTTTGTTGCAATAAAAGATGCTGCTAAAATTAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               580-738, - strand, RNAz p=0.992952
               

               
               888-1009, - strand, RNAz p=0.63352

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               580-738, - strand, RNAz p=0.992952
               

               
               888-1009, - strand, RNAz p=0.63352

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1009, gnl|bosTau2|chr10 (8816331-8815353)
               

               
               2-1009, gnl|Hg17|chr15 (63522818-63521858)
               

               
               2-1009, gnl|Mm7|chr9 (65113255-65114144)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1009, gnl|bosTau2|chr10 (8816331-8815353)
               

               
               2-1009, gnl|Hg17|chr15 (63522818-63521858)
               

               
               2-1009, gnl|Mm7|chr9 (65113255-65114144)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	580-738, - strand, RNAz p=0.992952
	888-1009, - strand, RNAz p=0.63352

	2-1009, gnl\|bosTau2\|chr10 (8816331-8815353)
	2-1009, gnl\|Hg17\|chr15 (63522818-63521858)
	2-1009, gnl\|Mm7\|chr9 (65113255-65114144)

	vin (0.332557)
	tbr (0.308356)
	liv (0.292569)
	cbe (0.239234)
	spc (0.226732)
	aor (0.195274)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	hyp (0.142837)
	ste (0.135208)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)
	cty (0.10408)