Non-Coding RNA Search

Ss1.1-Pig4-TMW8066I04.3

Sequence:


               
               GCACAACTTGTTGATAAAATCATTTAAAAATGATTCTCCAAGCAATGCATATCTGCTATT
CATTGATATTTAGAGTGGGTGTGATTTATTTAAAGTTTTACTGCTTTATATCTGTGTTTT
AATTTGCACCTGCTAAACATAATGCATCCTTTCCCTCTGCCATTCTTGTGTTGATTTGAG
GTTTTTGCTGTATGTAATTAGAAAAAAATGTAAAACATGATTTATGTGAAATATTGTATA
GTAAAAGTTGGTCTAATTGTAGAACTTTAAAATTTTTTCTTATTGTGAGGAATCGGTTAA
AAGTTTAAGGCTTTGCTGAAAACTTAATTCATTCTCAGGAATTTCATAAATATTCTCCCC
AGGTAAATAATTGAAATAGTTGTAAAATAAGTAGATAGCTGCTGTTAATATAATACAGTA
CATTTTGGGGGACATAATGTGTGGTTGGGGGAGTTCCTAAAAATCAAAATTTGCCATTTC
ACTTGGATGAATTACTTGAGGTAGTATCAAATAGATTTTACTATAAAAAATCGGAAGTTT
TAAGAGCATACACATGGCAGATTTTGATTCTGTGCATGCCCACCTTTTATTACCAACCAA
GTTTTTATTTAAATGATTGGATTGGAAGATGCTCTGACTTTCCCACAAATGAAACATAGT
TTTGAAACTTTCCTTATCAGCTCAAGAGGTTCATCTGTATTGAATTTGTGGAGTATAATC
ACTGTTATTTCTGCTTGGTTTCCTAAAAGGAAAAGAAAGAGGCCCAGTGGTGGTGATCTT
CATGAATGAGCTGTACATCTGCATCCTTGTTAGAAGCTGCTGTGAAAAGCAATTTATGTT
TGTAGGGTTTTTAAGTCCGTAAAAATGGATATGATTGAGCTAAAACCCACTCTGTTCTTA
TAGAAGGAAGATTACAGAGAAGCATGTTATTTATTGCTACCAAGATTTTTCTTCCAAATG
ATTCAATAATTTGATGATTATTTAATATATAGTGCTATCAAGCAATTCCTGATACGTTGG
ACTTCCATGGCTTGTTATATAAAATTACATTTTTATGTGTAAAAATAAACTAAAAAACAT
CTAATGATAAAATGTAAAAATAAAATCAGATCTGTGTCTAAAAATTATTGAATGACATGA
TATTACAAGATATAAAAATGGACATTAAATGATGACCGTGCATTAAAATAGAACAGAAGA
GTAAATATTCAAATGTGTTCAAAAAAATCAAAAAATTACCTATAGCTCTACAATAAAATA
CATGGAAATAGCTTGCTATTTTTATATACCTTTCCAAAATATTAAGATAACTTTCTGAAA
GACTAGAATGATTCTGTTTAATTAAATAGCAGTTCTTTCCAACACATTGCTACTTTTTTA
AATACTGTATCATAAACTCAGCCTGTCTTATTTTTTGCTTTGGTCATTATGGATACCAGA
CCATTTGTAAGTGTGGTTGAAGAACAAAATGCTAATTTACATCTCTAGTAAATACTGTTA
CAAGATTCATGAACTTGAATAATTCTACAGTTTGAAACTCTGATGCTATATATACATGGT
ATAATGTATTCATACTTTGATTACTACATATTTAAAATGGAATGTTTTATGGTTGTGCAT
ATGGATGTGAAGTGAAAATATTAGCCTTAACATTAAAATTTGGGTATTTGATAGTGTTTA
TTTTGATATTGGTGAATTAGTCACCAGTGAAATTTTAAAAAGCACTTGGTTGAAAACTGT
ACTTGAATTACATACATGCATGCTGCTAAACTAGAACTTTAGTTTTCCCCCATAACTTTT
ATAAGTCCCATTTATAAACCCACTTTTAAAAATAACAGGTCCAAATTAGAGTGATGTGTG
TATACTATTCAAAAAAAAAAATGTACTGGTGTGATATCTTGTATGAATGATCATTTAAAT
ACAGTACATTACTGTAGAAGCTAAATCAACCTTTATAATTAAGCAGAAATTACAAAACTA
GGAATAATCAACATTGTAAGATATGTTAATAAAAACCTGCCACCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAACTTGTTGATAAAATCATTTAAAAATGATTCTCCAAGCAATGCATATCTGCTATT
CATTGATATTTAGAGTGGGTGTGATTTATTTAAAGTTTTACTGCTTTATATCTGTGTTTT
AATTTGCACCTGCTAAACATAATGCATCCTTTCCCTCTGCCATTCTTGTGTTGATTTGAG
GTTTTTGCTGTATGTAATTAGAAAAAAATGTAAAACATGATTTATGTGAAATATTGTATA
GTAAAAGTTGGTCTAATTGTAGAACTTTAAAATTTTTTCTTATTGTGAGGAATCGGTTAA
AAGTTTAAGGCTTTGCTGAAAACTTAATTCATTCTCAGGAATTTCATAAATATTCTCCCC
AGGTAAATAATTGAAATAGTTGTAAAATAAGTAGATAGCTGCTGTTAATATAATACAGTA
CATTTTGGGGGACATAATGTGTGGTTGGGGGAGTTCCTAAAAATCAAAATTTGCCATTTC
ACTTGGATGAATTACTTGAGGTAGTATCAAATAGATTTTACTATAAAAAATCGGAAGTTT
TAAGAGCATACACATGGCAGATTTTGATTCTGTGCATGCCCACCTTTTATTACCAACCAA
GTTTTTATTTAAATGATTGGATTGGAAGATGCTCTGACTTTCCCACAAATGAAACATAGT
TTTGAAACTTTCCTTATCAGCTCAAGAGGTTCATCTGTATTGAATTTGTGGAGTATAATC
ACTGTTATTTCTGCTTGGTTTCCTAAAAGGAAAAGAAAGAGGCCCAGTGGTGGTGATCTT
CATGAATGAGCTGTACATCTGCATCCTTGTTAGAAGCTGCTGTGAAAAGCAATTTATGTT
TGTAGGGTTTTTAAGTCCGTAAAAATGGATATGATTGAGCTAAAACCCACTCTGTTCTTA
TAGAAGGAAGATTACAGAGAAGCATGTTATTTATTGCTACCAAGATTTTTCTTCCAAATG
ATTCAATAATTTGATGATTATTTAATATATAGTGCTATCAAGCAATTCCTGATACGTTGG
ACTTCCATGGCTTGTTATATAAAATTACATTTTTATGTGTAAAAATAAACTAAAAAACAT
CTAATGATAAAATGTAAAAATAAAATCAGATCTGTGTCTAAAAATTATTGAATGACATGA
TATTACAAGATATAAAAATGGACATTAAATGATGACCGTGCATTAAAATAGAACAGAAGA
GTAAATATTCAAATGTGTTCAAAAAAATCAAAAAATTACCTATAGCTCTACAATAAAATA
CATGGAAATAGCTTGCTATTTTTATATACCTTTCCAAAATATTAAGATAACTTTCTGAAA
GACTAGAATGATTCTGTTTAATTAAATAGCAGTTCTTTCCAACACATTGCTACTTTTTTA
AATACTGTATCATAAACTCAGCCTGTCTTATTTTTTGCTTTGGTCATTATGGATACCAGA
CCATTTGTAAGTGTGGTTGAAGAACAAAATGCTAATTTACATCTCTAGTAAATACTGTTA
CAAGATTCATGAACTTGAATAATTCTACAGTTTGAAACTCTGATGCTATATATACATGGT
ATAATGTATTCATACTTTGATTACTACATATTTAAAATGGAATGTTTTATGGTTGTGCAT
ATGGATGTGAAGTGAAAATATTAGCCTTAACATTAAAATTTGGGTATTTGATAGTGTTTA
TTTTGATATTGGTGAATTAGTCACCAGTGAAATTTTAAAAAGCACTTGGTTGAAAACTGT
ACTTGAATTACATACATGCATGCTGCTAAACTAGAACTTTAGTTTTCCCCCATAACTTTT
ATAAGTCCCATTTATAAACCCACTTTTAAAAATAACAGGTCCAAATTAGAGTGATGTGTG
TATACTATTCAAAAAAAAAAATGTACTGGTGTGATATCTTGTATGAATGATCATTTAAAT
ACAGTACATTACTGTAGAAGCTAAATCAACCTTTATAATTAAGCAGAAATTACAAAACTA
GGAATAATCAACATTGTAAGATATGTTAATAAAAACCTGCCACCATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-2018, gnl|bosTau2|chr2 (22327907-22329917)
               

               
               1-2018, gnl|Hg17|chr2 (170764118-170766116)
               

               
               1-2018, gnl|Mm7|chr2 (69952460-69954530)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2018, gnl|bosTau2|chr2 (22327907-22329917)
               

               
               1-2018, gnl|Hg17|chr2 (170764118-170766116)
               

               
               1-2018, gnl|Mm7|chr2 (69952460-69954530)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               bfe (1.049)
               

               
               ret (0.514933)
               

               
               fco (0.471624)
               

               
               nms (0.427716)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.049)
               

               
               ret (0.514933)
               

               
               fco (0.471624)
               

               
               nms (0.427716)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	1-2018, gnl\|bosTau2\|chr2 (22327907-22329917)
	1-2018, gnl\|Hg17\|chr2 (170764118-170766116)
	1-2018, gnl\|Mm7\|chr2 (69952460-69954530)

	bfe (1.049)
	ret (0.514933)
	fco (0.471624)
	nms (0.427716)
	tbr (0.308356)
	isp (0.300752)
	ski (0.29347)
	hyp (0.285673)
	mgp (0.230681)
	fcc (0.197785)
	ldo (0.194005)
	fty (0.17584)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	nca (0.136874)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	eje (0.0988338)