Ss1.1-Pig4-TMW8066I20.3
|
AGGTTTTCTTTTCTCCCAGGATGCATTAGAATGTCAGAAGCCCACATCTCCGTGGACCAG
GACGGACCACGAGTAGACCCACTTCAGTTTGGTGGCAGGGAGATTGTGTACACACTTTCT
CTGGAAGCTAGTTTTGCCCCCTGAAGGATTGAGGGGCCCCCAAGCCTAATGAGATGTGGG
TCCATGGGGGTAAAATAACAGAGCGTAGAGTTCTGTAGAGGAGTCCAGGGAGAGGCCATG
GCTATGCAGTCCCTTTTCCCCACAGGTGAGAGGCTCCAGTGATTGCTGGCAAGCTGGGGA
AATCGTGAGGAAGCTTGGTGACGGGTGAAACTTCCAACTTTGGGAAGAGGGTTCCTGGGA
TTCCATTTCTGGTAGTATCCTGGGGTACAGATATGCAACACACAGCTGCACATTCTCTCT
GCCCATTATGTGTGACCCACTAGTTCAAGCTGTACTTGGACAATTTAAGGAACATAACCC
TTCACAAACCTGTGGGACATTTGGGGGCAGGGGGAGTCCTGCCTTCAAATATTCAGCCAG
TGGTCACTTTCCACCCAGTGAGACCATATTCTCAGTACTTCCGTGAGGGCAGAAACCCCA
TCCTATCAGGTTTGATGGGCCACTTTCCCACTAAAAATGTCCTATTGAATCCCTGAGATG
TTTCTCTTCCCTGCAGAGAGTTGGAAGGTCCTTCAAAGAAAGGATCTGGGGAAGTCAGCA
AACCAAATATCACCTCCACATTGATTTTAGGAATTGACTCTCAAACTCTGTGCAGAATCT
TCCCTCCTGTCGGCATTGTATCTTGACATTCCTACTGCATTATTTTTCTTAAAGGAAGTG
TGTGCTGCCTTTCAGGTACAATTTTTGTGTCCTAAAAGCCAATGCATTAAGTTTATATAG
ACTACTTTCTATGCAAGACTGAGGTATGGAACAGATAGCAAGAGGTTACATGTGCCGTTG
GGTACATGAGCCAGAACATGTTTTCGGAAGGGGTACCGCCAGCGGACACGGGTTGAGGGA
GAATAGTTGTATATACATTTCTGCCCGCGAATTTTGAGCAGCCATATTTAAATCATCAGA
GCCAAGTCACCCAAGAATGGTATTAGTTTCATGTGTAAATATCCCCAAATGGAACCAGTA
TACATGCTGAAATGGAATGTAATGCTAGATATTCCATGTCTTTTCTCATTGAAAGACTCT
TGTGAATTACTAGAAACTTTAGGCAAAGTCAAATGTATCTGCAGCAAAACAACGGCCTGC
TCTGCTCTTATTTCAAGTGAAATCCATGTTTCTCTCCAAAGTGAAATTGGATATTGATGA
TTTCCATTGCCTTGATACGTTTCTATTATCACTGATGGATGCTGAAGACTTTACTATATT
GTCGCACAATTTTAAAATAATTTTTGTCTCAACGTCAGTTTTTTCACCAAATAAAAACTT
TAACTGGATCAAGAAAACACCTCTTTGAAAATCCAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGTTTTCTTTTCTCCCAGGATGCATTAGAATGTCAGAAGCCCACATCTCCGTGGACCAG
GACGGACCACGAGTAGACCCACTTCAGTTTGGTGGCAGGGAGATTGTGTACACACTTTCT
CTGGAAGCTAGTTTTGCCCCCTGAAGGATTGAGGGGCCCCCAAGCCTAATGAGATGTGGG
TCCATGGGGGTAAAATAACAGAGCGTAGAGTTCTGTAGAGGAGTCCAGGGAGAGGCCATG
GCTATGCAGTCCCTTTTCCCCACAGGTGAGAGGCTCCAGTGATTGCTGGCAAGCTGGGGA
AATCGTGAGGAAGCTTGGTGACGGGTGAAACTTCCAACTTTGGGAAGAGGGTTCCTGGGA
TTCCATTTCTGGTAGTATCCTGGGGTACAGATATGCAACACACAGCTGCACATTCTCTCT
GCCCATTATGTGTGACCCACTAGTTCAAGCTGTACTTGGACAATTTAAGGAACATAACCC
TTCACAAACCTGTGGGACATTTGGGGGCAGGGGGAGTCCTGCCTTCAAATATTCAGCCAG
TGGTCACTTTCCACCCAGTGAGACCATATTCTCAGTACTTCCGTGAGGGCAGAAACCCCA
TCCTATCAGGTTTGATGGGCCACTTTCCCACTAAAAATGTCCTATTGAATCCCTGAGATG
TTTCTCTTCCCTGCAGAGAGTTGGAAGGTCCTTCAAAGAAAGGATCTGGGGAAGTCAGCA
AACCAAATATCACCTCCACATTGATTTTAGGAATTGACTCTCAAACTCTGTGCAGAATCT
TCCCTCCTGTCGGCATTGTATCTTGACATTCCTACTGCATTATTTTTCTTAAAGGAAGTG
TGTGCTGCCTTTCAGGTACAATTTTTGTGTCCTAAAAGCCAATGCATTAAGTTTATATAG
ACTACTTTCTATGCAAGACTGAGGTATGGAACAGATAGCAAGAGGTTACATGTGCCGTTG
GGTACATGAGCCAGAACATGTTTTCGGAAGGGGTACCGCCAGCGGACACGGGTTGAGGGA
GAATAGTTGTATATACATTTCTGCCCGCGAATTTTGAGCAGCCATATTTAAATCATCAGA
GCCAAGTCACCCAAGAATGGTATTAGTTTCATGTGTAAATATCCCCAAATGGAACCAGTA
TACATGCTGAAATGGAATGTAATGCTAGATATTCCATGTCTTTTCTCATTGAAAGACTCT
TGTGAATTACTAGAAACTTTAGGCAAAGTCAAATGTATCTGCAGCAAAACAACGGCCTGC
TCTGCTCTTATTTCAAGTGAAATCCATGTTTCTCTCCAAAGTGAAATTGGATATTGATGA
TTTCCATTGCCTTGATACGTTTCTATTATCACTGATGGATGCTGAAGACTTTACTATATT
GTCGCACAATTTTAAAATAATTTTTGTCTCAACGTCAGTTTTTTCACCAAATAAAAACTT
TAACTGGATCAAGAAAACACCTCTTTGAAAATCCAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-471, gnl|bosTau2|chr15 (18480048-18480515) |
|
1-471, gnl|canFam2|chr5 (15500513-15499675) |
|
1-471, gnl|dasNov1|scaffold_173618 (4149-3406) |
|
1-471, gnl|echTel1|scaffold_316145 (124820-123999) |
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1-471, gnl|hg17|chr11 (121007835-121008648) |
|
1-471, gnl|Hg17|chr11 (121008063-121008545) |
|
1-471, gnl|loxAfr1|scaffold_298 (181260-182082) |
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1-471, gnl|mm7|chr9 (41900715-41900105) |
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1-471, gnl|monDom2|scaffold_2 (115560062-115559205) |
|
1-471, gnl|oryCun1|scaffold_204650 (37396-38092) |
|
1-471, gnl|panTro1|chr9 (123054898-123055711) |
|
1-471, gnl|rheMac2|chr14 (120057533-120058336) |
|
1-471, gnl|rn3|chr8 (44968969-44968369) |
| |
|
485-1474, gnl|bosTau2|chr15 (18480502-18481511) |
|
485-1474, gnl|Hg17|chr11 (121008532-121009612) |
|
485-1474, gnl|Mm7|chr9 (41900216-41899145) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-471, gnl|bosTau2|chr15 (18480048-18480515) |
|
1-471, gnl|canFam2|chr5 (15500513-15499675) |
|
1-471, gnl|dasNov1|scaffold_173618 (4149-3406) |
|
1-471, gnl|echTel1|scaffold_316145 (124820-123999) |
|
1-471, gnl|hg17|chr11 (121007835-121008648) |
|
1-471, gnl|Hg17|chr11 (121008063-121008545) |
|
1-471, gnl|loxAfr1|scaffold_298 (181260-182082) |
|
1-471, gnl|mm7|chr9 (41900715-41900105) |
|
1-471, gnl|monDom2|scaffold_2 (115560062-115559205) |
|
1-471, gnl|oryCun1|scaffold_204650 (37396-38092) |
|
1-471, gnl|panTro1|chr9 (123054898-123055711) |
|
1-471, gnl|rheMac2|chr14 (120057533-120058336) |
|
1-471, gnl|rn3|chr8 (44968969-44968369) |
| |
|
485-1474, gnl|bosTau2|chr15 (18480502-18481511) |
|
485-1474, gnl|Hg17|chr11 (121008532-121009612) |
|
485-1474, gnl|Mm7|chr9 (41900216-41899145) |
|
lyg (0.931718) |
|
sag (0.730861) |
|
lin (0.582411) |
|
fco (0.471624) |
|
ret (0.3862) |
|
fhi (0.339155) |
|
kid (0.259471) |
|
sug (0.254582) |
|
thg (0.253582) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
cbl (0.229595) |
|
rec (0.17307) |
|
duo (0.172801) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
ova (0.129132) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
lyg (0.931718) |
|
sag (0.730861) |
|
lin (0.582411) |
|
fco (0.471624) |
|
ret (0.3862) |
|
fhi (0.339155) |
|
kid (0.259471) |
|
sug (0.254582) |
|
thg (0.253582) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
cbl (0.229595) |
|
rec (0.17307) |
|
duo (0.172801) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
ova (0.129132) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
