Non-Coding RNA Search

Ss1.1-Pig4-TMW8066I22.3

Sequence:


               
               GGACAGCGGGGTCTTCGCGGCCTCCGGAGCAGACAACCAGATCACCCAGTGGGACCTGGC
CGTGGAGCGGGACCCCGAGGCAGGCGACACGGAGACCGACCCCGGGCTGGTGGGCCTGCC
CCAGCAGCTGCTGTTCGTGCACCAGGGCGAGACGGACCTGAAGGAGCTGCACTGGCACCC
GCAGTGCCCCGGGGTCCTGGTCAGCACCGCCCTGTCGGGCTTTACCGTCTTCCGCACCAT
CAGCGTGTGAGGCCGCCCGCCTGCCCGCCCGCGTCTGTCTGGTCCTCCGCTCGGGAGCGG
AAGTTAAGTTCCTTCCCCTGGAGGGGACTCTCTCAGATCTGGAGGGGAGGCCAGCCCCCC
CCCTCCGAAGGGACTTAGTTTGGCCGATTGACCGCCCCGATGGATTCCATTTGACTTGGA
AAGGTGTTGGTTTGGTCCAGTGACCCTTCCAGCCGAAGGATGTGGTTTGCCCCGTGGCCC
TATAAAACCACTGGGTTTGACCCCACTGACCCCTCCTACCCAAGGACTTGGTTCAGCCCG
GTGACCCCCACCTGTCAGAAGAGTCCATTGGCCCATTTCCCAGGTGGGCCTGAAGGTGGC
TGTGTTGCTGCAGATACTCTGTTAGCTGCATGCCACTGGGCTTGACCCTTTGACCTCTCA
GCCACTGGGCTCCCCCAGGGAACTCGCGTGCTTTGCAGTGGCTGTGCCAAATTTGAGGGC
TGGGTTCTTCCAGCCGAATTTGGTTTAGTCCCTGTCCTCCTGCCAGCTGGATGTGGCCAC
AGAGCTTCCCAGGGAGAGGCTGTGTGGGGCCTTCTCCCCTCCTCCCGAAGGGGGGCGCTT
GCAGGGAGGAAAAGTGCGGGCTCCCGAGGGGCAATAAAGGACCAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAGCGGGGTCTTCGCGGCCTCCGGAGCAGACAACCAGATCACCCAGTGGGACCTGGC
CGTGGAGCGGGACCCCGAGGCAGGCGACACGGAGACCGACCCCGGGCTGGTGGGCCTGCC
CCAGCAGCTGCTGTTCGTGCACCAGGGCGAGACGGACCTGAAGGAGCTGCACTGGCACCC
GCAGTGCCCCGGGGTCCTGGTCAGCACCGCCCTGTCGGGCTTTACCGTCTTCCGCACCAT
CAGCGTGTGAGGCCGCCCGCCTGCCCGCCCGCGTCTGTCTGGTCCTCCGCTCGGGAGCGG
AAGTTAAGTTCCTTCCCCTGGAGGGGACTCTCTCAGATCTGGAGGGGAGGCCAGCCCCCC
CCCTCCGAAGGGACTTAGTTTGGCCGATTGACCGCCCCGATGGATTCCATTTGACTTGGA
AAGGTGTTGGTTTGGTCCAGTGACCCTTCCAGCCGAAGGATGTGGTTTGCCCCGTGGCCC
TATAAAACCACTGGGTTTGACCCCACTGACCCCTCCTACCCAAGGACTTGGTTCAGCCCG
GTGACCCCCACCTGTCAGAAGAGTCCATTGGCCCATTTCCCAGGTGGGCCTGAAGGTGGC
TGTGTTGCTGCAGATACTCTGTTAGCTGCATGCCACTGGGCTTGACCCTTTGACCTCTCA
GCCACTGGGCTCCCCCAGGGAACTCGCGTGCTTTGCAGTGGCTGTGCCAAATTTGAGGGC
TGGGTTCTTCCAGCCGAATTTGGTTTAGTCCCTGTCCTCCTGCCAGCTGGATGTGGCCAC
AGAGCTTCCCAGGGAGAGGCTGTGTGGGGCCTTCTCCCCTCCTCCCGAAGGGGGGCGCTT
GCAGGGAGGAAAAGTGCGGGCTCCCGAGGGGCAATAAAGGACCAGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842149|ref|XP_597001.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842149|ref|XP_597001.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-422, - strand, RNAz p=0.994875

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-422, - strand, RNAz p=0.994875

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-531, gnl|bosTau2|chr18 (50365313-50364783)
               

               
               1-531, gnl|Hg17|chr19 (53647845-53648382)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-531, gnl|bosTau2|chr18 (50365313-50364783)
               

               
               1-531, gnl|Hg17|chr19 (53647845-53648382)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	1-531, gnl\|bosTau2\|chr18 (50365313-50364783)
	1-531, gnl\|Hg17\|chr19 (53647845-53648382)