Non-Coding RNA Search

Ss1.1-Pig4-TMW8066J08.3

Sequence:


               
               AGATCATCACCGACCGACCTGGCTTTCATGACGAGAGTGCCATCTACCCTGTGGGCTACT
GCAGTACTCGGATATATGCCAGCATGCAGCACCCAGACCAAGAGTGTCTGTACACCTGTC
AGATCAAGGACGGTGGCACGGGGCCCCAGTTTGAAATTGTTCCTGAAGATGACCCCCAGA
ATGCCATTGTCAGCTCTTCTGCAGATGCCTGTCATGCCGAACTGCTCAAGACCATAAGTG
CTGCTATGGGGAAACTAATGCCCAACGTGCTTCCATCCGGAGCTGATTTTTTTGGGTTTT
CTCATCCAACCATCCACAACCTGATCCAGAGTTGTCCAGGAGCTCGAAAATGCGTCAGTT
ACCAGTGGGTGAAGTTTGACGTGTGCAAACCTGGAGATGGGCCACCGCCCCAAAGGCAGC
TGGAGGATGACTCAGCAACAAGCTTTGAAGCCTTTCAGAGACAGACCTTCGATGAAGATC
ATAATGATCCCATTCTACAAGGATCCTTGGACCTCCCGGAGCTTCAGCCTACAGCCTTTG
TGTCTTCCTACCAACCCATGTTCCTGACACATGAACCATTGATAGAAACTCACCTACAAC
ACTTGAAGTCTCCATCGCATTGTAGCCCAACTCAGTCTTCAGACTAAACAAGAAGGGATC
AGATACCACATCATCTTTAACATGATCAGTTTTGTTAACTTAAAACTTAGACTAGAAGAA
GGCAGCAACTCAGAGAAGATAGTAAATTAACACATTGTGTCAAGGAGGTTCCCATGGTGA
CAGCTTTCCTGAGAAAAATTTCAGCTGCTTTATTTTTAGTAATAAATTTCTCTTGAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCATCACCGACCGACCTGGCTTTCATGACGAGAGTGCCATCTACCCTGTGGGCTACT
GCAGTACTCGGATATATGCCAGCATGCAGCACCCAGACCAAGAGTGTCTGTACACCTGTC
AGATCAAGGACGGTGGCACGGGGCCCCAGTTTGAAATTGTTCCTGAAGATGACCCCCAGA
ATGCCATTGTCAGCTCTTCTGCAGATGCCTGTCATGCCGAACTGCTCAAGACCATAAGTG
CTGCTATGGGGAAACTAATGCCCAACGTGCTTCCATCCGGAGCTGATTTTTTTGGGTTTT
CTCATCCAACCATCCACAACCTGATCCAGAGTTGTCCAGGAGCTCGAAAATGCGTCAGTT
ACCAGTGGGTGAAGTTTGACGTGTGCAAACCTGGAGATGGGCCACCGCCCCAAAGGCAGC
TGGAGGATGACTCAGCAACAAGCTTTGAAGCCTTTCAGAGACAGACCTTCGATGAAGATC
ATAATGATCCCATTCTACAAGGATCCTTGGACCTCCCGGAGCTTCAGCCTACAGCCTTTG
TGTCTTCCTACCAACCCATGTTCCTGACACATGAACCATTGATAGAAACTCACCTACAAC
ACTTGAAGTCTCCATCGCATTGTAGCCCAACTCAGTCTTCAGACTAAACAAGAAGGGATC
AGATACCACATCATCTTTAACATGATCAGTTTTGTTAACTTAAAACTTAGACTAGAAGAA
GGCAGCAACTCAGAGAAGATAGTAAATTAACACATTGTGTCAAGGAGGTTCCCATGGTGA
CAGCTTTCCTGAGAAAAATTTCAGCTGCTTTATTTTTAGTAATAAATTTCTCTTGAAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812680|ref|XP_584065.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812680|ref|XP_584065.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               493-612, - strand, RNAz p=0.801359

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               493-612, - strand, RNAz p=0.801359

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-149, gnl|bosTau2|chr29 (21006250-21006102)
               

               
               1-149, gnl|Hg17|chr11 (124002008-124002156)
               

               
               1-149, gnl|Mm7|chr9 (37581343-37581195)
               


               
               245-369, gnl|bosTau2|chr29 (21001946-21001824)
               

               
               245-369, gnl|Hg17|chr11 (124005848-124005970)
               

               
               245-369, gnl|Mm7|chr9 (37579642-37579520)
               


               
               493-836, gnl|bosTau2|chr29 (20999155-20998806)
               

               
               493-836, gnl|Hg17|chr11 (124007191-124007540)
               

               
               493-836, gnl|Mm7|chr9 (37578091-37577769)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-149, gnl|bosTau2|chr29 (21006250-21006102)
               

               
               1-149, gnl|Hg17|chr11 (124002008-124002156)
               

               
               1-149, gnl|Mm7|chr9 (37581343-37581195)
               


               
               245-369, gnl|bosTau2|chr29 (21001946-21001824)
               

               
               245-369, gnl|Hg17|chr11 (124005848-124005970)
               

               
               245-369, gnl|Mm7|chr9 (37579642-37579520)
               


               
               493-836, gnl|bosTau2|chr29 (20999155-20998806)
               

               
               493-836, gnl|Hg17|chr11 (124007191-124007540)
               

               
               493-836, gnl|Mm7|chr9 (37578091-37577769)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)

	1-149, gnl\|bosTau2\|chr29 (21006250-21006102)
	1-149, gnl\|Hg17\|chr11 (124002008-124002156)
	1-149, gnl\|Mm7\|chr9 (37581343-37581195)

	245-369, gnl\|bosTau2\|chr29 (21001946-21001824)
	245-369, gnl\|Hg17\|chr11 (124005848-124005970)
	245-369, gnl\|Mm7\|chr9 (37579642-37579520)

	493-836, gnl\|bosTau2\|chr29 (20999155-20998806)
	493-836, gnl\|Hg17\|chr11 (124007191-124007540)
	493-836, gnl\|Mm7\|chr9 (37578091-37577769)

	pla (0.267344)
	fcc (0.197785)
	csk (0.140746)
	cst (0.140036)
	nmm (0.132802)