Non-Coding RNA Search

Ss1.1-Pig4-TMW8066J16.3

Sequence:


               
               GAGGAGGAGGAGGCTGTGTACGAGGAGCCCCCAGAGCAGGAGACCCTCTACGAGGAGCCT
CCAATGGTGCAGCTGCAAGAGGCCAGTTCGGCACACGTTGACCACTACCCAGGGCTGAGT
GGCAAAGGGCTCTGTGCCCGGGCCCTGTACGACTACCAGGCAGCCGACGAGACCGAGATC
TCCTTTGACCCTGAGAACCTCATCACGGGCATTGAAGTGATTGACGAAGGCTGGTGGCGC
GGCTACGGGCCCGACGGCCACTTTGGCATGTTTCCTGCCAACTACGTGGAGCTCATTGAG
TAAAGACCCCAGTTGCTGGCGAAGCGAAGGGCTGTCCGTCTCCACCCAGACGGGGTCTCC
TGGTTGCTGGAAGAGGTGGCGCAAGGAGTGTGTGCGGTGCTTTTCCAGGAAGGGGACCCC
TGATGCGGACGAGCCCTCGGGCTGCCTCTGGCTTGGGTGGCTCCGCCTCTGTTACCCCAC
ATGCAGCAATAACCTGGTGATCTCCACGTGTGCTTCCACCAGCTCCCCAGTCCTCCCAGA
CAGCCTGGCCCTTGACCCCCCTCAGCAGGGCACACTGAGCCAAGTCCTCCCCAGGGCCAG
ACCCCCAGGGACCTCTGCCCAAGAAGAACGGCACTGCTGTGCTGCGGGCTCTGAGCAGGG
GCATCCGGAGGCCGCCTCCTGCATTTGCCTTCTCCTCCTTTCTCTCTTGGCTCTAAGGGT
TGGTGGCGGTAGCTGTTAATGACCCTTGGGAACAGTGAACTGAAGAGTTTATGACCAAAG
TTGGGGCAGGGATCCACGACAGTTTGGGCAGCAGGTGTTCGCTTTCTGAACTCTACCCTG
TGCTCCCCACTTCTCTGCCCCTCTGCCCGGGTGGTGGGCGGTGGGCAGTGGAGATGGGAC
CGACCAGGCCCCCATCTGTGTGTGCAAAGGAAGAGGTGAAAACATCAACAGACACGACGT
GGCCTTCCGCGTGGCTCACTCCTGTCTGCCGGCCCATGTGCTGCTCAGTCGATCTGGGTC
AGGAACAGGTACCGTGGTGGCCGGTCCTGCTGTCTGCCTTATTTCCGCCCCAGCCCACCC
TTACCTGCTTTTGGAGTCAGAATTGCCCCACGCGGGCCCCAGCTCTGATCCATCCTGTTA
CAGCCTGAATCCCCCACCACCACCCCGTGGAAACAACCCCCTTTCTGGTGTTGGGGGTAG
GGGTGGGTGAGTCACCTGTGCAGGCTGACCCCTGGCCAGTGTTAGCCACCCTGAAGGGGC
ATAAAGGTTAACGTGACTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGGAGGAGGCTGTGTACGAGGAGCCCCCAGAGCAGGAGACCCTCTACGAGGAGCCT
CCAATGGTGCAGCTGCAAGAGGCCAGTTCGGCACACGTTGACCACTACCCAGGGCTGAGT
GGCAAAGGGCTCTGTGCCCGGGCCCTGTACGACTACCAGGCAGCCGACGAGACCGAGATC
TCCTTTGACCCTGAGAACCTCATCACGGGCATTGAAGTGATTGACGAAGGCTGGTGGCGC
GGCTACGGGCCCGACGGCCACTTTGGCATGTTTCCTGCCAACTACGTGGAGCTCATTGAG
TAAAGACCCCAGTTGCTGGCGAAGCGAAGGGCTGTCCGTCTCCACCCAGACGGGGTCTCC
TGGTTGCTGGAAGAGGTGGCGCAAGGAGTGTGTGCGGTGCTTTTCCAGGAAGGGGACCCC
TGATGCGGACGAGCCCTCGGGCTGCCTCTGGCTTGGGTGGCTCCGCCTCTGTTACCCCAC
ATGCAGCAATAACCTGGTGATCTCCACGTGTGCTTCCACCAGCTCCCCAGTCCTCCCAGA
CAGCCTGGCCCTTGACCCCCCTCAGCAGGGCACACTGAGCCAAGTCCTCCCCAGGGCCAG
ACCCCCAGGGACCTCTGCCCAAGAAGAACGGCACTGCTGTGCTGCGGGCTCTGAGCAGGG
GCATCCGGAGGCCGCCTCCTGCATTTGCCTTCTCCTCCTTTCTCTCTTGGCTCTAAGGGT
TGGTGGCGGTAGCTGTTAATGACCCTTGGGAACAGTGAACTGAAGAGTTTATGACCAAAG
TTGGGGCAGGGATCCACGACAGTTTGGGCAGCAGGTGTTCGCTTTCTGAACTCTACCCTG
TGCTCCCCACTTCTCTGCCCCTCTGCCCGGGTGGTGGGCGGTGGGCAGTGGAGATGGGAC
CGACCAGGCCCCCATCTGTGTGTGCAAAGGAAGAGGTGAAAACATCAACAGACACGACGT
GGCCTTCCGCGTGGCTCACTCCTGTCTGCCGGCCCATGTGCTGCTCAGTCGATCTGGGTC
AGGAACAGGTACCGTGGTGGCCGGTCCTGCTGTCTGCCTTATTTCCGCCCCAGCCCACCC
TTACCTGCTTTTGGAGTCAGAATTGCCCCACGCGGGCCCCAGCTCTGATCCATCCTGTTA
CAGCCTGAATCCCCCACCACCACCCCGTGGAAACAACCCCCTTTCTGGTGTTGGGGGTAG
GGGTGGGTGAGTCACCTGTGCAGGCTGACCCCTGGCCAGTGTTAGCCACCCTGAAGGGGC
ATAAAGGTTAACGTGACTCAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               352-468, - strand, RNAz p=0.876233
               

               
               509-626, - strand, RNAz p=0.709094
               

               
               703-914, + strand, RNAz p=0.992163

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-468, - strand, RNAz p=0.876233
               

               
               509-626, - strand, RNAz p=0.709094
               

               
               703-914, + strand, RNAz p=0.992163

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               510-687, - strand, RNAmicro p=0.999705
               

               
               861-990, - strand, RNAmicro p=0.984973
               

               
               325-453, + strand, RNAmicro p=0.962609

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               510-687, - strand, RNAmicro p=0.999705
               

               
               861-990, - strand, RNAmicro p=0.984973
               

               
               325-453, + strand, RNAmicro p=0.962609

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK027367, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK027367, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               160-1145, gnl|bosTau2|chr22 (276120-277087)
               

               
               160-1145, gnl|Hg17|chr7 (43873612-43874607)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-1145, gnl|bosTau2|chr22 (276120-277087)
               

               
               160-1145, gnl|Hg17|chr7 (43873612-43874607)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               ecc (0.46014)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.46014)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	352-468, - strand, RNAz p=0.876233
	509-626, - strand, RNAz p=0.709094
	703-914, + strand, RNAz p=0.992163

	510-687, - strand, RNAmicro p=0.999705
	861-990, - strand, RNAmicro p=0.984973
	325-453, + strand, RNAmicro p=0.962609

	160-1145, gnl\|bosTau2\|chr22 (276120-277087)
	160-1145, gnl\|Hg17\|chr7 (43873612-43874607)

	ecc (0.46014)
	nlu (0.383362)
	nep (0.36785)
	eye (0.341006)
	jej (0.296765)
	eje (0.296501)
	hyp (0.285673)
	cly (0.241284)
	med (0.232504)
	fli (0.202881)
	fcc (0.197785)
	ill (0.175593)
	mcp (0.170648)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	lnt (0.142308)
	hlv (0.139256)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)
	cty (0.10408)
	nbm (0.0993246)