Non-Coding RNA Search

Ss1.1-Pig4-TMW8066K06.3

Sequence:


               
               CTAATCCTGTTGCATCAGTCGATCAGATTCATAGAAAAAGGTAATGTGACAAAATACACA
TGCCTTTATCTGTACGTTGGAAAATGCCAGGCAGATTATCAGTTACAGACTGCTACTTAT
TTTTTGTGAAGGGCATTTTTTTTTTTAAGACAACTTCATCCTTTTTGTATTTGTTTGTTG
ATTATTTAGGGTTTTTTCCCACATGAGGAAAAGTAGTATGAGCAGTAGGGAAAGAAATGG
AAACAGCAGAGGAAGGTACATTTTGCATGATTTTCCTTTCCGTGTTCTAACCTTACACGT
TGTATTTCTACATTGTACTAAGAGCTTCTATAAGATCTGCCATAGTTGGTTTATGCAGCT
TTGCAAAGATTTTACTAGATTTTGCACTAATTCTTACTAGCTTTGTCCTACCAAGTTCTG
GAATTGATCTAATTGTTGTTTTTTAAAAGTTTCCTTTTGTTTACTATCACCCTGCTATGC
AAAACCTTTCCCAGACCTTAGTTTCGTAAAAGAAAGACGTTGCTACAGTTCCCGATTCTT
TCTTATTACAGGCTCAGGTGTACAGGTTATTCTGGGTTTAATTTTATCTAATGAAGCCCA
TTCCTTTTGTACATAAATGTCACTTAAACCTATGCTTACAAACTAAAGAGACTAATTGCT
CAATATTGAAAACATGGAAATCAAGTTTTTGCTTAAAATATTAACATGGAAGTAGTCATA
TAGGTTACTTTGTCCTTTTACTTTTAAAAAATGTTACATATTGTATGCACTGTGCTGATG
CAAGAATCCTACATTTAAATGAATTATAAAATTATTCTGCATCTCATCACGTCACAGTAT
TTCTGTACTATTTATTCATATATGTAGATATAGATATATATGGGCTTAATCATTTAAAAC
TTGTTGCGGCAAGAACTTTCCTACCTGTAGGCAACAGATTGCTATGTTTTTAACAGATTG
TGGCAAATTTAAACAGCAATTCTTTTTGTACGTAATAGGACATTTCATCCTAGAAAAAAT
AAAGTAATGTTTTTGACATTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAATCCTGTTGCATCAGTCGATCAGATTCATAGAAAAAGGTAATGTGACAAAATACACA
TGCCTTTATCTGTACGTTGGAAAATGCCAGGCAGATTATCAGTTACAGACTGCTACTTAT
TTTTTGTGAAGGGCATTTTTTTTTTTAAGACAACTTCATCCTTTTTGTATTTGTTTGTTG
ATTATTTAGGGTTTTTTCCCACATGAGGAAAAGTAGTATGAGCAGTAGGGAAAGAAATGG
AAACAGCAGAGGAAGGTACATTTTGCATGATTTTCCTTTCCGTGTTCTAACCTTACACGT
TGTATTTCTACATTGTACTAAGAGCTTCTATAAGATCTGCCATAGTTGGTTTATGCAGCT
TTGCAAAGATTTTACTAGATTTTGCACTAATTCTTACTAGCTTTGTCCTACCAAGTTCTG
GAATTGATCTAATTGTTGTTTTTTAAAAGTTTCCTTTTGTTTACTATCACCCTGCTATGC
AAAACCTTTCCCAGACCTTAGTTTCGTAAAAGAAAGACGTTGCTACAGTTCCCGATTCTT
TCTTATTACAGGCTCAGGTGTACAGGTTATTCTGGGTTTAATTTTATCTAATGAAGCCCA
TTCCTTTTGTACATAAATGTCACTTAAACCTATGCTTACAAACTAAAGAGACTAATTGCT
CAATATTGAAAACATGGAAATCAAGTTTTTGCTTAAAATATTAACATGGAAGTAGTCATA
TAGGTTACTTTGTCCTTTTACTTTTAAAAAATGTTACATATTGTATGCACTGTGCTGATG
CAAGAATCCTACATTTAAATGAATTATAAAATTATTCTGCATCTCATCACGTCACAGTAT
TTCTGTACTATTTATTCATATATGTAGATATAGATATATATGGGCTTAATCATTTAAAAC
TTGTTGCGGCAAGAACTTTCCTACCTGTAGGCAACAGATTGCTATGTTTTTAACAGATTG
TGGCAAATTTAAACAGCAATTCTTTTTGTACGTAATAGGACATTTCATCCTAGAAAAAAT
AAAGTAATGTTTTTGACATTAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               113-219, - strand, RNAz p=0.984279
               

               
               495-612, - strand, RNAz p=0.584887
               

               
               751-870, - strand, RNAz p=0.618569

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-219, - strand, RNAz p=0.984279
               

               
               495-612, - strand, RNAz p=0.584887
               

               
               751-870, - strand, RNAz p=0.618569

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1040, gnl|bosTau2|chr19 (42948829-42947790)
               

               
               1-1040, gnl|Hg17|chr17 (63409915-63410953)
               

               
               1-1040, gnl|Mm7|chr11 (107143811-107142852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1040, gnl|bosTau2|chr19 (42948829-42947790)
               

               
               1-1040, gnl|Hg17|chr17 (63409915-63410953)
               

               
               1-1040, gnl|Mm7|chr11 (107143811-107142852)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	113-219, - strand, RNAz p=0.984279
	495-612, - strand, RNAz p=0.584887
	751-870, - strand, RNAz p=0.618569

	1-1040, gnl\|bosTau2\|chr19 (42948829-42947790)
	1-1040, gnl\|Hg17\|chr17 (63409915-63410953)
	1-1040, gnl\|Mm7\|chr11 (107143811-107142852)