Non-Coding RNA Search

Ss1.1-Pig4-TMW8066K08.3

Sequence:


               
               AATGAGTTCAACACGGGAGCCATGAAGAACAAGGCCCAGTCTGTGCGGGAGGTGTTTGCC
AGGCAGCTGATGCAGGTGCGTGGAGTGAGCGGGGAGAAGGCAGCCGCACTGGTGGATCGG
TACAGTACCCCTGCCAGCCTGCTGGCCGCCTATGACGCCTGTGCCACCTCGAAGGAACAG
GAGATGCTGCTGAGCACCATCAAGTGTGGGCCACTGCAGCGGAATCTGGGGCCCGCTCTG
AGCAGGACCTTGTCACAGCTCTACTGCACCTCTGGCCCCCTGACCTGAGCCATGGCACGG
GACAGGCCCCAGCCCCCTCTTCTCAGGCTCACCAGCCTTTTAATCAGAATCTTTGGGCTG
CAGTAAAAATCTAAGTGCTTGCAGCTTTCTGTGTTACGGAGGCGACGCCAGGCCCCAGGG
ATCTCGTGAGATAGCCAGCCAGAAACTGCCAACACTCTCTGGTCCAAGGGTTTTTAAACT
GAGCTCCTTAATTAGCTATAATGGAAAAAAATAAAAAGCATTATAAAAAAAATAAAACCC
ATTCTGCCAATAAAATATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAGTTCAACACGGGAGCCATGAAGAACAAGGCCCAGTCTGTGCGGGAGGTGTTTGCC
AGGCAGCTGATGCAGGTGCGTGGAGTGAGCGGGGAGAAGGCAGCCGCACTGGTGGATCGG
TACAGTACCCCTGCCAGCCTGCTGGCCGCCTATGACGCCTGTGCCACCTCGAAGGAACAG
GAGATGCTGCTGAGCACCATCAAGTGTGGGCCACTGCAGCGGAATCTGGGGCCCGCTCTG
AGCAGGACCTTGTCACAGCTCTACTGCACCTCTGGCCCCCTGACCTGAGCCATGGCACGG
GACAGGCCCCAGCCCCCTCTTCTCAGGCTCACCAGCCTTTTAATCAGAATCTTTGGGCTG
CAGTAAAAATCTAAGTGCTTGCAGCTTTCTGTGTTACGGAGGCGACGCCAGGCCCCAGGG
ATCTCGTGAGATAGCCAGCCAGAAACTGCCAACACTCTCTGGTCCAAGGGTTTTTAAACT
GAGCTCCTTAATTAGCTATAATGGAAAAAAATAAAAAGCATTATAAAAAAAATAAAACCC
ATTCTGCCAATAAAATATAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-323, - strand, RNAz p=0.997775

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-323, - strand, RNAz p=0.997775

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               32-137, gnl|bosTau2|chr29 (30482905-30483010)
               

               
               32-137, gnl|canFam2|chr18 (54423386-54423274)
               

               
               32-137, gnl|dasNov1|scaffold_96837 (2739-2636)
               

               
               32-137, gnl|echTel1|scaffold_91434 (303-191)
               

               
               32-137, gnl|fr1|chrUn (304782754-304782862)
               

               
               32-137, gnl|hg17|chr11 (65389266-65389378)
               

               
               32-137, gnl|Hg17|chr11 (65389265-65389370)
               

               
               32-137, gnl|mm7|chr19 (5378367-5378255)
               

               
               32-137, gnl|Mm7|chr19 (5378366-5378261)
               

               
               32-137, gnl|monDom2|scaffold_107 (3016318-3016208)
               

               
               32-137, gnl|oryCun1|scaffold_84679 (2018-2132)
               

               
               32-137, gnl|panTro1|chr9 (66635645-66635757)
               

               
               32-137, gnl|rheMac2|chr14 (8589376-8589264)
               

               
               32-137, gnl|rn3|chr1 (208280852-208280740)
               

               
               32-137, gnl|tetNig1|chrUn_random (12875555-12875447)
               

               
               32-137, gnl|xenTro1|scaffold_521 (650883-650991)
               


               
               215-489, gnl|bosTau2|chr29 (30483676-30483943)
               

               
               215-489, gnl|Hg17|chr11 (65390028-65390306)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-137, gnl|bosTau2|chr29 (30482905-30483010)
               

               
               32-137, gnl|canFam2|chr18 (54423386-54423274)
               

               
               32-137, gnl|dasNov1|scaffold_96837 (2739-2636)
               

               
               32-137, gnl|echTel1|scaffold_91434 (303-191)
               

               
               32-137, gnl|fr1|chrUn (304782754-304782862)
               

               
               32-137, gnl|hg17|chr11 (65389266-65389378)
               

               
               32-137, gnl|Hg17|chr11 (65389265-65389370)
               

               
               32-137, gnl|mm7|chr19 (5378367-5378255)
               

               
               32-137, gnl|Mm7|chr19 (5378366-5378261)
               

               
               32-137, gnl|monDom2|scaffold_107 (3016318-3016208)
               

               
               32-137, gnl|oryCun1|scaffold_84679 (2018-2132)
               

               
               32-137, gnl|panTro1|chr9 (66635645-66635757)
               

               
               32-137, gnl|rheMac2|chr14 (8589376-8589264)
               

               
               32-137, gnl|rn3|chr1 (208280852-208280740)
               

               
               32-137, gnl|tetNig1|chrUn_random (12875555-12875447)
               

               
               32-137, gnl|xenTro1|scaffold_521 (650883-650991)
               


               
               215-489, gnl|bosTau2|chr29 (30483676-30483943)
               

               
               215-489, gnl|Hg17|chr11 (65390028-65390306)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               pgl (0.118483)

	32-137, gnl\|bosTau2\|chr29 (30482905-30483010)
	32-137, gnl\|canFam2\|chr18 (54423386-54423274)
	32-137, gnl\|dasNov1\|scaffold_96837 (2739-2636)
	32-137, gnl\|echTel1\|scaffold_91434 (303-191)
	32-137, gnl\|fr1\|chrUn (304782754-304782862)
	32-137, gnl\|hg17\|chr11 (65389266-65389378)
	32-137, gnl\|Hg17\|chr11 (65389265-65389370)
	32-137, gnl\|mm7\|chr19 (5378367-5378255)
	32-137, gnl\|Mm7\|chr19 (5378366-5378261)
	32-137, gnl\|monDom2\|scaffold_107 (3016318-3016208)
	32-137, gnl\|oryCun1\|scaffold_84679 (2018-2132)
	32-137, gnl\|panTro1\|chr9 (66635645-66635757)
	32-137, gnl\|rheMac2\|chr14 (8589376-8589264)
	32-137, gnl\|rn3\|chr1 (208280852-208280740)
	32-137, gnl\|tetNig1\|chrUn_random (12875555-12875447)
	32-137, gnl\|xenTro1\|scaffold_521 (650883-650991)

	215-489, gnl\|bosTau2\|chr29 (30483676-30483943)
	215-489, gnl\|Hg17\|chr11 (65390028-65390306)