Ss1.1-Pig4-TMW8066K12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAAGAGTAATTGGAATTGCTCTTAAGAAACAGTTTGGATGGAAAGTAGATTTGAGGAA TCCAAATTTAGAGATCTTTATACATTTAAGTGACATTTACTCTGTGGTGGGAATTCCTGT TTTCAGGGTTCCTTTAGCCAGCAGAGCTTACATCAAGACAGCTGGACTGAGATCCACCAT AGCATGGGCAATGGCGTCTCTTGCAGAAATTAAGGCTGGTGCATTTGTTTTAGATCCAAT GTGTGGACTTGGAACAATACTTTTGGAGGCTGCAAAAGAATGGCCAGATGTGTATTATGT GGGTGCTGATGTCAGTGACTCACAGTTACTAGGTGCGTCTGACAATCTGAAAGCTGCAGG CCTTAAGGATAAAATCGAGTTACTTAAAGGCTCTGTTATAGAATTGCCATTACCTTCAGA AAGTGTTGATATTATTATTTCTGACATTCCATTTGGGAAAAAGTTTAAGTTAGGAAAAGA TATCAAAAGCATTCTGCAAGAAATGGAAAGAGTGCTTCATGTTGGCGGGACCATCGTGTT GCTGCTTAGTGGAGACCACCTCAGGCGCCTTAAAGGTTGTGAAGAGAGCAGCGTCTCCTT GTGTCCCAAGGGCAGCCGCACAGATGAACCTGGAAGTGAAGAATGCTTGAATCCTGAAGA GAAAGCTGCCGTACCAGAGCCAGCATGGTCTTCACTTGAAGCCAGTAACCAGGAACACTT GGACAGAATGCCACCCTTTGGCTCTTTAGTGCCAGTGGAATGCTACAAAGTTAGCCTGGG AAAACCAGATGCATTCATATACAAATATAAGAAGTCGCACTCCCCTGGGCAATAGCAGGT CTGCCGGGTTCAAGTCCTCATTTGTCAGCGGTACAGCCTAGAAGAGGGTGGTCTCTGGGA TCTTGACAGTGCCAGAGGGTTGCAAGTAAACAGACCTCGATCCTCACAAGTTTGGGAATA TGTACACTATCAGAATTTCTGAAACATAGAAACTTTTATGTTTTGTTTTGGTATCAACTT CTTTTGATATTAAACTTGATTTTTTGAAGCTGTCATTTTGTTCTCCACTGGAATGAAAAT AACTTAATTTGCAGTACATTTGCTGTGTCCCCTATTTTATAAAACATCAGTGGGAATAAT AACCCTGTGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAAGAGTAATTGGAATTGCTCTTAAGAAACAGTTTGGATGGAAAGTAGATTTGAGGAA TCCAAATTTAGAGATCTTTATACATTTAAGTGACATTTACTCTGTGGTGGGAATTCCTGT TTTCAGGGTTCCTTTAGCCAGCAGAGCTTACATCAAGACAGCTGGACTGAGATCCACCAT AGCATGGGCAATGGCGTCTCTTGCAGAAATTAAGGCTGGTGCATTTGTTTTAGATCCAAT GTGTGGACTTGGAACAATACTTTTGGAGGCTGCAAAAGAATGGCCAGATGTGTATTATGT GGGTGCTGATGTCAGTGACTCACAGTTACTAGGTGCGTCTGACAATCTGAAAGCTGCAGG CCTTAAGGATAAAATCGAGTTACTTAAAGGCTCTGTTATAGAATTGCCATTACCTTCAGA AAGTGTTGATATTATTATTTCTGACATTCCATTTGGGAAAAAGTTTAAGTTAGGAAAAGA TATCAAAAGCATTCTGCAAGAAATGGAAAGAGTGCTTCATGTTGGCGGGACCATCGTGTT GCTGCTTAGTGGAGACCACCTCAGGCGCCTTAAAGGTTGTGAAGAGAGCAGCGTCTCCTT GTGTCCCAAGGGCAGCCGCACAGATGAACCTGGAAGTGAAGAATGCTTGAATCCTGAAGA GAAAGCTGCCGTACCAGAGCCAGCATGGTCTTCACTTGAAGCCAGTAACCAGGAACACTT GGACAGAATGCCACCCTTTGGCTCTTTAGTGCCAGTGGAATGCTACAAAGTTAGCCTGGG AAAACCAGATGCATTCATATACAAATATAAGAAGTCGCACTCCCCTGGGCAATAGCAGGT CTGCCGGGTTCAAGTCCTCATTTGTCAGCGGTACAGCCTAGAAGAGGGTGGTCTCTGGGA TCTTGACAGTGCCAGAGGGTTGCAAGTAAACAGACCTCGATCCTCACAAGTTTGGGAATA TGTACACTATCAGAATTTCTGAAACATAGAAACTTTTATGTTTTGTTTTGGTATCAACTT CTTTTGATATTAAACTTGATTTTTTGAAGCTGTCATTTTGTTCTCCACTGGAATGAAAAT AACTTAATTTGCAGTACATTTGCTGTGTCCCCTATTTTATAAAACATCAGTGGGAATAAT AACCCTGTGAGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 115-215, gnl|bosTau2|chr11 (17049233-17049133) | |
| 115-215, gnl|canFam2|chr17 (34827188-34827327) | |
| 115-215, gnl|dasNov1|scaffold_134717 (4594-4457) | |
| 115-215, gnl|echTel1|scaffold_316992 (47411-47544) | |
| 115-215, gnl|galGal2|chr3 (13059039-13059159) | |
| 115-215, gnl|hg17|chr2 (39900103-39900236) | |
| 115-215, gnl|Hg17|chr2 (39900219-39900121) | |
| 115-215, gnl|mm7|chr17 (79341198-79341336) | |
| 115-215, gnl|Mm7|chr17 (79341359-79341212) | |
| 115-215, gnl|monDom2|scaffold_23 (43350636-43350781) | |
| 115-215, gnl|oryCun1|scaffold_72833 (978-1118) | |
| 115-215, gnl|panTro1|chr12 (41399188-41399321) | |
| 115-215, gnl|rheMac2|chr13 (39750733-39750866) | |
| 115-215, gnl|rn3|chr6 (4006152-4006286) | |
| 288-401, gnl|bosTau2|chr11 (17042243-17042130) | |
| 288-401, gnl|canFam2|chr17 (34819170-34819321) | |
| 288-401, gnl|dasNov1|scaffold_7393 (8160-8311) | |
| 288-401, gnl|echTel1|scaffold_316992 (39576-39720) | |
| 288-401, gnl|hg17|chr2 (39894067-39894218) | |
| 288-401, gnl|Hg17|chr2 (39894199-39894086) | |
| 288-401, gnl|loxAfr1|scaffold_9896 (63372-63523) | |
| 288-401, gnl|mm7|chr17 (79334598-79334753) | |
| 288-401, gnl|Mm7|chr17 (79334728-79334615) | |
| 288-401, gnl|monDom2|scaffold_23 (43344856-43345007) | |
| 288-401, gnl|oryCun1|scaffold_135158 (1006-1149) | |
| 288-401, gnl|panTro1|chr12 (41393112-41393263) | |
| 288-401, gnl|rheMac2|chr13 (39743978-39744129) | |
| 288-401, gnl|rn3|chr6 (3999378-3999519) | |
| 509-934, gnl|bosTau2|chr11 (17025325-17024901) | |
| 509-934, gnl|Hg17|chr2 (39875852-39875418) | |
| 509-934, gnl|Mm7|chr17 (79324089-79323666) | |
| 1022-1142, gnl|bosTau2|chr11 (17024605-17024483) | |
| 1022-1142, gnl|Hg17|chr2 (39875128-39875011) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-215, gnl|bosTau2|chr11 (17049233-17049133) | |
| 115-215, gnl|canFam2|chr17 (34827188-34827327) | |
| 115-215, gnl|dasNov1|scaffold_134717 (4594-4457) | |
| 115-215, gnl|echTel1|scaffold_316992 (47411-47544) | |
| 115-215, gnl|galGal2|chr3 (13059039-13059159) | |
| 115-215, gnl|hg17|chr2 (39900103-39900236) | |
| 115-215, gnl|Hg17|chr2 (39900219-39900121) | |
| 115-215, gnl|mm7|chr17 (79341198-79341336) | |
| 115-215, gnl|Mm7|chr17 (79341359-79341212) | |
| 115-215, gnl|monDom2|scaffold_23 (43350636-43350781) | |
| 115-215, gnl|oryCun1|scaffold_72833 (978-1118) | |
| 115-215, gnl|panTro1|chr12 (41399188-41399321) | |
| 115-215, gnl|rheMac2|chr13 (39750733-39750866) | |
| 115-215, gnl|rn3|chr6 (4006152-4006286) | |
| 288-401, gnl|bosTau2|chr11 (17042243-17042130) | |
| 288-401, gnl|canFam2|chr17 (34819170-34819321) | |
| 288-401, gnl|dasNov1|scaffold_7393 (8160-8311) | |
| 288-401, gnl|echTel1|scaffold_316992 (39576-39720) | |
| 288-401, gnl|hg17|chr2 (39894067-39894218) | |
| 288-401, gnl|Hg17|chr2 (39894199-39894086) | |
| 288-401, gnl|loxAfr1|scaffold_9896 (63372-63523) | |
| 288-401, gnl|mm7|chr17 (79334598-79334753) | |
| 288-401, gnl|Mm7|chr17 (79334728-79334615) | |
| 288-401, gnl|monDom2|scaffold_23 (43344856-43345007) | |
| 288-401, gnl|oryCun1|scaffold_135158 (1006-1149) | |
| 288-401, gnl|panTro1|chr12 (41393112-41393263) | |
| 288-401, gnl|rheMac2|chr13 (39743978-39744129) | |
| 288-401, gnl|rn3|chr6 (3999378-3999519) | |
| 509-934, gnl|bosTau2|chr11 (17025325-17024901) | |
| 509-934, gnl|Hg17|chr2 (39875852-39875418) | |
| 509-934, gnl|Mm7|chr17 (79324089-79323666) | |
| 1022-1142, gnl|bosTau2|chr11 (17024605-17024483) | |
| 1022-1142, gnl|Hg17|chr2 (39875128-39875011) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| fce (0.543183) | |
| mgp (0.461361) | |
| pan (0.23596) | |
| nms (0.213858) | |
| eye (0.170503) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lin (0.145603) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| mgp (0.461361) | |
| pan (0.23596) | |
| nms (0.213858) | |
| eye (0.170503) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lin (0.145603) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) |