Non-Coding RNA Search

Ss1.1-Pig4-TMW8066K18.3

Sequence:


               
               AAAAGGAAGATACTAAAGTTATACCTACAGAATGTGCCATCAAGGTATTTAAAACAACCC
TTAATGAGTTTAAGAATCGTGACAAGTATATTAAAGATGATTTCAGGTTTAAAGATCGCT
TCAGTAAACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAAAAAGAAATGCACAATC
TCACAAGAATGCAAAGAGCTGGAATTCCTTGTCCAACAGTTGTACTACTCAAGAAACACA
TTTTAGTTATGTCTTTTATTGGCCATGATCAAGTACCAGCCCCTAAATTAAAAGAAGTAA
AGCTCAGCAGTGAAGAAATGAAAGAAGCCTACTATCAAACTCTTCATTTGATGCAGCAGT
TGTATAATGAATGTATGCTTGTACACGCCGACCTCAGTGAGTATAACATGCTGTGGCATG
CTGGGAAGGTCTGGTTGATCGATGTCAGTCAGTCTGTAGAACCAACCCATCCTCATGGCC
TGGAGTTCTTATTCCGTGACTGTAGGAATGTCTCACAGTTTTTCCAGAAAGGAGGAGTGA
AGGAAGCCCTTGGCGAGCGAGAACTCTTCAATGCTGTCTCAGGCTTAAACATCTCGGCAG
ATAATGAAGCTGATTTCTTAGCTGAGATAGAAGCTTTGGAAAAAATGAACGAAGATCATG
TTCAGAAGAACGGAAGGAAAGCTGCTTCATTTTTGAAAGATGATGGAGGTCCGCCAGTCC
TATATGATGAATAGCACTAATAGCCACTGCTTTCAGTGTTAACACAGCGGTGATTGTCAG
CTGCCAATGGCACATGAAGTTATGGGTGACTTGAAATACCAAAACATGAGGAGTGTACAA
TGGTGCTTCTGTGCTTCTTTTCCCTTGTAACCCATATGCCAGGTGCGTGGAATTTTTAGC
TCGGTATCGAAAGAATAAAATGTCACTACCTCTCATGATATGAATAAGGTAATATAATTC
TTAATAGCAGGTTATCTAGCTGAAATCAACCTGATTTTACAGGATTTGTGGCATAAAAAG
TTTTGATGAGAATTTTTAACATTTCCAAATATGGGAGGAAGGGACAGATGTGTTTACAAG
GGAGGCTTTTATTACAACGTACTTGCCTTTTTCACCTCCCTGTTTTGTGTTGCGTCTTTC
CTCAGATATTTTATTGCCCTAAAATTAGCCCTTCTCAATTCTTTTTCCATATTGTGACCA
TGATTTTAAAGGAAAATTTCTTCTCTTTAGTACATAAGTGGAAATTTGGTTTCAGCATGA
CTGACAGAAATAGACATTAGCAAAGTACTTTTTATTGGTACATTATGAACATGAACTGAA
TTTTTCTTTTTCATACTCATATCCAAAGAAAGGCATCATAGGTCCCTGAAAGAGAGAAAT
ACATAAGTACTTCTCGACTATCCACATTTTTTAAATTTAACTTTCAGATTTTCTACATTT
AGGTGAAATGGTTAGGATGTAACTCATGGTACAGCCACTCTGCATTTATAGTGAAAATGT
GAATTATCTGGAAGGACAGAATAGACTCTTTAACCATGTTTGACATATTTTAATGAAGTC
AGTGAAACAAAGTTCAGTTTATGTTTCACTCAAATTATGTACTGATTGATTTTGAGAAAA
ATACAGCAAGCTAATTAGAAACATTATATAATCAAATGAGGAAAAGTATATATCAATCAA
GTTGGGGTCCAGATTAACCAACTAATTTGAACTATCTGGCCTCACTCTTAATAATTTTAG
TACTGGCTGGATGCCACTTTTTGATACAAGTACTATACTGGGAAAGTACATGCTTTGTTA
GGATTGAAGCTCATTAACTACCACAAAATCATTCCTCATTACTGAAATCAGATTGGACTC
ACTAAAGACCTAAACTCTGGTAATAGAAAGTAAAAATCTAAACATTATTTATACTCGAAA
GCATCTCCATTAAAATTATTTTAAAATGCCAGATATGTTCTTTCTAGAAAAATATTTATT
TTTGTTCCCATTGTATAACTTTTAATTGCATTTGGAGAAGTGTGATTTGGGATAGATATT
TGTTACACTTCTGAAAGGTTTACCACTATGAAACAAATATTTAGATGACTGGTGATTATT
GGCTTTACAGAAATTTCAGAGAACTAATTTTAAAAACTATTAACCATTAAAAATTTTTTT
TGGTTTTGTTTTCTGACATACTGTTTAACAAAGAGCAGCAAACCATTGCTGTGTGGCATT
CTAGTAGGAGTGTGCTGTGAACATGCTTTTTAAGAAATTAAAAATGAAAAGATCATTTTA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGAAGATACTAAAGTTATACCTACAGAATGTGCCATCAAGGTATTTAAAACAACCC
TTAATGAGTTTAAGAATCGTGACAAGTATATTAAAGATGATTTCAGGTTTAAAGATCGCT
TCAGTAAACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAAAAAGAAATGCACAATC
TCACAAGAATGCAAAGAGCTGGAATTCCTTGTCCAACAGTTGTACTACTCAAGAAACACA
TTTTAGTTATGTCTTTTATTGGCCATGATCAAGTACCAGCCCCTAAATTAAAAGAAGTAA
AGCTCAGCAGTGAAGAAATGAAAGAAGCCTACTATCAAACTCTTCATTTGATGCAGCAGT
TGTATAATGAATGTATGCTTGTACACGCCGACCTCAGTGAGTATAACATGCTGTGGCATG
CTGGGAAGGTCTGGTTGATCGATGTCAGTCAGTCTGTAGAACCAACCCATCCTCATGGCC
TGGAGTTCTTATTCCGTGACTGTAGGAATGTCTCACAGTTTTTCCAGAAAGGAGGAGTGA
AGGAAGCCCTTGGCGAGCGAGAACTCTTCAATGCTGTCTCAGGCTTAAACATCTCGGCAG
ATAATGAAGCTGATTTCTTAGCTGAGATAGAAGCTTTGGAAAAAATGAACGAAGATCATG
TTCAGAAGAACGGAAGGAAAGCTGCTTCATTTTTGAAAGATGATGGAGGTCCGCCAGTCC
TATATGATGAATAGCACTAATAGCCACTGCTTTCAGTGTTAACACAGCGGTGATTGTCAG
CTGCCAATGGCACATGAAGTTATGGGTGACTTGAAATACCAAAACATGAGGAGTGTACAA
TGGTGCTTCTGTGCTTCTTTTCCCTTGTAACCCATATGCCAGGTGCGTGGAATTTTTAGC
TCGGTATCGAAAGAATAAAATGTCACTACCTCTCATGATATGAATAAGGTAATATAATTC
TTAATAGCAGGTTATCTAGCTGAAATCAACCTGATTTTACAGGATTTGTGGCATAAAAAG
TTTTGATGAGAATTTTTAACATTTCCAAATATGGGAGGAAGGGACAGATGTGTTTACAAG
GGAGGCTTTTATTACAACGTACTTGCCTTTTTCACCTCCCTGTTTTGTGTTGCGTCTTTC
CTCAGATATTTTATTGCCCTAAAATTAGCCCTTCTCAATTCTTTTTCCATATTGTGACCA
TGATTTTAAAGGAAAATTTCTTCTCTTTAGTACATAAGTGGAAATTTGGTTTCAGCATGA
CTGACAGAAATAGACATTAGCAAAGTACTTTTTATTGGTACATTATGAACATGAACTGAA
TTTTTCTTTTTCATACTCATATCCAAAGAAAGGCATCATAGGTCCCTGAAAGAGAGAAAT
ACATAAGTACTTCTCGACTATCCACATTTTTTAAATTTAACTTTCAGATTTTCTACATTT
AGGTGAAATGGTTAGGATGTAACTCATGGTACAGCCACTCTGCATTTATAGTGAAAATGT
GAATTATCTGGAAGGACAGAATAGACTCTTTAACCATGTTTGACATATTTTAATGAAGTC
AGTGAAACAAAGTTCAGTTTATGTTTCACTCAAATTATGTACTGATTGATTTTGAGAAAA
ATACAGCAAGCTAATTAGAAACATTATATAATCAAATGAGGAAAAGTATATATCAATCAA
GTTGGGGTCCAGATTAACCAACTAATTTGAACTATCTGGCCTCACTCTTAATAATTTTAG
TACTGGCTGGATGCCACTTTTTGATACAAGTACTATACTGGGAAAGTACATGCTTTGTTA
GGATTGAAGCTCATTAACTACCACAAAATCATTCCTCATTACTGAAATCAGATTGGACTC
ACTAAAGACCTAAACTCTGGTAATAGAAAGTAAAAATCTAAACATTATTTATACTCGAAA
GCATCTCCATTAAAATTATTTTAAAATGCCAGATATGTTCTTTCTAGAAAAATATTTATT
TTTGTTCCCATTGTATAACTTTTAATTGCATTTGGAGAAGTGTGATTTGGGATAGATATT
TGTTACACTTCTGAAAGGTTTACCACTATGAAACAAATATTTAGATGACTGGTGATTATT
GGCTTTACAGAAATTTCAGAGAACTAATTTTAAAAACTATTAACCATTAAAAATTTTTTT
TGGTTTTGTTTTCTGACATACTGTTTAACAAAGAGCAGCAAACCATTGCTGTGTGGCATT
CTAGTAGGAGTGTGCTGTGAACATGCTTTTTAAGAAATTAAAAATGAAAAGATCATTTTA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26372877|dbj|BAB27405.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26372877|dbj|BAB27405.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1440-1559, + strand, RNAz p=0.524006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1440-1559, + strand, RNAz p=0.524006

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145906, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145906, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-187, gnl|bosTau2|chr24 (24552190-24552375)
               

               
               2-187, gnl|Hg17|chr18 (19307403-19307588)
               

               
               2-187, gnl|Mm7|chr18 (12498741-12498926)
               


               
               625-2283, gnl|bosTau2|chr24 (24557424-24559035)
               

               
               625-2283, gnl|Hg17|chr18 (19315132-19317099)
               

               
               625-2283, gnl|Mm7|chr18 (12505156-12506639)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-187, gnl|bosTau2|chr24 (24552190-24552375)
               

               
               2-187, gnl|Hg17|chr18 (19307403-19307588)
               

               
               2-187, gnl|Mm7|chr18 (12498741-12498926)
               


               
               625-2283, gnl|bosTau2|chr24 (24557424-24559035)
               

               
               625-2283, gnl|Hg17|chr18 (19315132-19317099)
               

               
               625-2283, gnl|Mm7|chr18 (12505156-12506639)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

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               lin (1.74723)
               

               
               mgp (1.1534)
               

               
               liv (1.02399)
               

               
               vin (0.997672)
               

               
               bfe (0.749288)
               

               
               ret (0.643666)
               

               
               fce (0.543183)
               

               
               sin (0.524843)
               

               
               mga (0.480615)
               

               
               cbl (0.45919)
               

               
               spl (0.429553)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               ssp (0.271039)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.74723)
               

               
               mgp (1.1534)
               

               
               liv (1.02399)
               

               
               vin (0.997672)
               

               
               bfe (0.749288)
               

               
               ret (0.643666)
               

               
               fce (0.543183)
               

               
               sin (0.524843)
               

               
               mga (0.480615)
               

               
               cbl (0.45919)
               

               
               spl (0.429553)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               ssp (0.271039)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	2-187, gnl\|bosTau2\|chr24 (24552190-24552375)
	2-187, gnl\|Hg17\|chr18 (19307403-19307588)
	2-187, gnl\|Mm7\|chr18 (12498741-12498926)

	625-2283, gnl\|bosTau2\|chr24 (24557424-24559035)
	625-2283, gnl\|Hg17\|chr18 (19315132-19317099)
	625-2283, gnl\|Mm7\|chr18 (12505156-12506639)

	lin (1.74723)
	mgp (1.1534)
	liv (1.02399)
	vin (0.997672)
	bfe (0.749288)
	ret (0.643666)
	fce (0.543183)
	sin (0.524843)
	mga (0.480615)
	cbl (0.45919)
	spl (0.429553)
	kid (0.389206)
	tra (0.369276)
	fty (0.351679)
	rec (0.346141)
	fco (0.314416)
	isp (0.300752)
	cte (0.29274)
	ssp (0.271039)
	bla (0.248694)
	eru (0.240096)
	ecc (0.23007)
	jca (0.22792)
	ldo (0.194005)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	ton (0.1755)
	duo (0.172801)
	fhi (0.169578)
	nco (0.161734)
	tbr (0.154178)
	fat (0.147427)
	lnt (0.142308)
	hlv (0.139256)
	ste (0.135208)
	nmm (0.132802)
	ova (0.129132)
	ese (0.126502)
	med (0.116252)
	cty (0.10408)