Non-Coding RNA Search

Ss1.1-Pig4-TMW8066L09.3

Sequence:


               
               GTCCAAAGATTTTCCAGAAGACCAAGTGCAGCATCTGTAACAGTGCCTTGGAGTTGCCCT
CTGTCCACTTTCTCTGCGGCCACTCCTTCCACCAGCACTGCTTTGAGAGTTACTCGGAAA
GTGATGCCGACTGCCCCACCTGCCTCCCTGAAAACCGCAAGGTCATGGATATGATCCGGG
CTCAGGAACAGAAGCGAGATCTCCACGATCAATTCCAGCACCAGCTCAAGTGCTCCAATG
ACAGCTTCTCTGTGATTGCCGATTACTTTGGCAGAGGTGTTTTCAACAAATTGACTCTGC
TGACCGACCCACCCCCAGCCCGGCTGACTTCGAGCCTGGAGGCCGGACTGCAGCGGGACT
TGCTCATGCACTCCAGAAGGGGCACCTAGGCGGCTGGTGGGAAGGGGTATGATGGCGGAG
GCCCAGCAGCAGGGACATGGGGACAGAGGCAGGGCTCTTGCACAGGAGTCAGGCAGACAT
GCCCAGGACTCCACTCTCCTCTGATGCCATGGTCCTCAGACCTTAAGGGGACTTTGTTTT
CCTGCCTCCTTCATTGGCCAACCCGCCATTCCCCCTGTTGACTTTTTGAGCAGTGTAGAT
CATTCCAGACCAGTGGGGGAGGGTACCTCAGCAACCTCGGGGTCTGGACAATAGCTACTT
TATTCTCTGTCCAAGAGCACCAGGCTGTGCTTGGGTCCTGGCTCGCAGAGTCTATAAATA
AAAGAATATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAAAGATTTTCCAGAAGACCAAGTGCAGCATCTGTAACAGTGCCTTGGAGTTGCCCT
CTGTCCACTTTCTCTGCGGCCACTCCTTCCACCAGCACTGCTTTGAGAGTTACTCGGAAA
GTGATGCCGACTGCCCCACCTGCCTCCCTGAAAACCGCAAGGTCATGGATATGATCCGGG
CTCAGGAACAGAAGCGAGATCTCCACGATCAATTCCAGCACCAGCTCAAGTGCTCCAATG
ACAGCTTCTCTGTGATTGCCGATTACTTTGGCAGAGGTGTTTTCAACAAATTGACTCTGC
TGACCGACCCACCCCCAGCCCGGCTGACTTCGAGCCTGGAGGCCGGACTGCAGCGGGACT
TGCTCATGCACTCCAGAAGGGGCACCTAGGCGGCTGGTGGGAAGGGGTATGATGGCGGAG
GCCCAGCAGCAGGGACATGGGGACAGAGGCAGGGCTCTTGCACAGGAGTCAGGCAGACAT
GCCCAGGACTCCACTCTCCTCTGATGCCATGGTCCTCAGACCTTAAGGGGACTTTGTTTT
CCTGCCTCCTTCATTGGCCAACCCGCCATTCCCCCTGTTGACTTTTTGAGCAGTGTAGAT
CATTCCAGACCAGTGGGGGAGGGTACCTCAGCAACCTCGGGGTCTGGACAATAGCTACTT
TATTCTCTGTCCAAGAGCACCAGGCTGTGCTTGGGTCCTGGCTCGCAGAGTCTATAAATA
AAAGAATATAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26332761|dbj|BAC30098.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26332761|dbj|BAC30098.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               222-732, gnl|bosTau2|chr15 (14272830-14273346)
               

               
               222-732, gnl|Hg17|chr11 (118457376-118457883)
               

               
               222-732, gnl|Mm7|chr9 (44282932-44282457)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-732, gnl|bosTau2|chr15 (14272830-14273346)
               

               
               222-732, gnl|Hg17|chr11 (118457376-118457883)
               

               
               222-732, gnl|Mm7|chr9 (44282932-44282457)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	222-732, gnl\|bosTau2\|chr15 (14272830-14273346)
	222-732, gnl\|Hg17\|chr11 (118457376-118457883)
	222-732, gnl\|Mm7\|chr9 (44282932-44282457)

	cly (0.241284)
	fcc (0.197785)
	ill (0.175593)
	pgl (0.118483)
	ecc (0.115035)