Non-Coding RNA Search

Ss1.1-Pig4-TMW8066L11.3

Sequence:


               
               AGGACCCCAGCCTCCATGGCTCTGGCTCTTTGATGCTAGGGACCGCTCAGATCCATGGTT
TGAAGGCACAGGCCCTCAGGAACCAGTTAGGTGAAGACAGTCCTTAGAGAACGCAGCAGA
GGGAGCGCCTGGGCCTCTGAGACAGACCGACAGGGAGGGCCCAGCGGGGAGGGGTGGGCT
CTGCTTGTCCCCCCGGGTTGTCGGTGGACTCAGTTCCTCAGCTGATGACATGAAAGGCTT
TGAGCACCTCGGCCAAGCCCGCGCTATACCTCATCTTGAGACTGCGCATCTCGCCATTGA
TTGTGGTTCCGATGCTTAGGAAGTCAAAGAGGTATGATCGACCCTCAGATAACCTGGCCC
AGCGCAGCTGACTCCCCTGCCTCCCACCCCCAGAACCCTGGCTCTGCCACTAGCTGGAAC
CCAAGACTCTGCCCACCTGTCGTTCTGCCCCTCTCCCGTTGTATACATAGATGTGTCTCT
GCATGCGTGCGCTTTCCTGTCTTGGGAAACACAAGAAACAAAAAGAGAGCGATGCTTTCT
CCAAAATCAAAGAGGGAGTCCCTTTATTTTCCAGACGTTCTATCTTTTTTGTTAAGAGAG
AAAAGCTTAGAGTTTTCCTTTTTGGCTTTTGTGAAGGAGGGCTCACTCTACCAGTTTCCA
GTGTCTGTGTGTCTATATGTGTATGTGCCATACATATGTATTCACATAAGCCGCCGGCGT
GGCCAGGTTCAGCCGGAGGGGCGCTCGAGGGCCGGGCGCGGGGCCTCCGAACCCTGAAGG
GCCGTGGTGTATATAGTGCAGCTTTGAAGTGGAGCGTTCTTTTCCCACTTTTCTATGGAG
CCTTCCAGTCCCAGGTTTTTCACTTAGGCTGTCTGTCTGGACGGCGGGTATCAGACCCCC
CACTAACATCTCTCCCCAGCATTCCCGACTTTGGGGGCCTTCTCTCTTGTTACAAACTTT
TTACCAAGTGAAACATCGATACCACCTTTGTTTCCATTCTCACGGGTGTAAATACTGAGT
ACTAACTGAGAATTTTGACTTTGCATTCTGTCAGAATACTTGTGTTCAATAAAAATGGAA
AGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACCCCAGCCTCCATGGCTCTGGCTCTTTGATGCTAGGGACCGCTCAGATCCATGGTT
TGAAGGCACAGGCCCTCAGGAACCAGTTAGGTGAAGACAGTCCTTAGAGAACGCAGCAGA
GGGAGCGCCTGGGCCTCTGAGACAGACCGACAGGGAGGGCCCAGCGGGGAGGGGTGGGCT
CTGCTTGTCCCCCCGGGTTGTCGGTGGACTCAGTTCCTCAGCTGATGACATGAAAGGCTT
TGAGCACCTCGGCCAAGCCCGCGCTATACCTCATCTTGAGACTGCGCATCTCGCCATTGA
TTGTGGTTCCGATGCTTAGGAAGTCAAAGAGGTATGATCGACCCTCAGATAACCTGGCCC
AGCGCAGCTGACTCCCCTGCCTCCCACCCCCAGAACCCTGGCTCTGCCACTAGCTGGAAC
CCAAGACTCTGCCCACCTGTCGTTCTGCCCCTCTCCCGTTGTATACATAGATGTGTCTCT
GCATGCGTGCGCTTTCCTGTCTTGGGAAACACAAGAAACAAAAAGAGAGCGATGCTTTCT
CCAAAATCAAAGAGGGAGTCCCTTTATTTTCCAGACGTTCTATCTTTTTTGTTAAGAGAG
AAAAGCTTAGAGTTTTCCTTTTTGGCTTTTGTGAAGGAGGGCTCACTCTACCAGTTTCCA
GTGTCTGTGTGTCTATATGTGTATGTGCCATACATATGTATTCACATAAGCCGCCGGCGT
GGCCAGGTTCAGCCGGAGGGGCGCTCGAGGGCCGGGCGCGGGGCCTCCGAACCCTGAAGG
GCCGTGGTGTATATAGTGCAGCTTTGAAGTGGAGCGTTCTTTTCCCACTTTTCTATGGAG
CCTTCCAGTCCCAGGTTTTTCACTTAGGCTGTCTGTCTGGACGGCGGGTATCAGACCCCC
CACTAACATCTCTCCCCAGCATTCCCGACTTTGGGGGCCTTCTCTCTTGTTACAAACTTT
TTACCAAGTGAAACATCGATACCACCTTTGTTTCCATTCTCACGGGTGTAAATACTGAGT
ACTAACTGAGAATTTTGACTTTGCATTCTGTCAGAATACTTGTGTTCAATAAAAATGGAA
AGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               610-725, - strand, RNAz p=0.919103

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               610-725, - strand, RNAz p=0.919103

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr15 (10220619-10221707)
               

               
               1-1092, gnl|Hg17|chr11 (112653300-112654363)
               

               
               1-1092, gnl|Mm7|chr9 (49478481-49477380)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr15 (10220619-10221707)
               

               
               1-1092, gnl|Hg17|chr11 (112653300-112654363)
               

               
               1-1092, gnl|Mm7|chr9 (49478481-49477380)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fcc (0.593354)
               

               
               ecc (0.575175)
               

               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               ecc (0.575175)
               

               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	1-1092, gnl\|bosTau2\|chr15 (10220619-10221707)
	1-1092, gnl\|Hg17\|chr11 (112653300-112654363)
	1-1092, gnl\|Mm7\|chr9 (49478481-49477380)

	fcc (0.593354)
	ecc (0.575175)
	ese (0.253004)
	ece (0.229305)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	nmm (0.132802)
	eep (0.122564)
	ebs (0.118301)