Non-Coding RNA Search

Ss1.1-Pig4-TMW8066L24.3

Sequence:


               
               CTTGCTCGCCGGGGCGCTGAGTTCCGGGGTTCGGGGCTCGGCCCCTCCGCCCACCGCTCT
TTGCCGCTGCTGTCCTGAGTCCTGCGCAGACCCCCGCCACTTGTGTTTCCGCCACCCCCT
CGGATGAAGCAGCTTTGGCCCACGGTTTCGGAGAGAGGTGGGGGGCAGTGCCTCCTCGAG
GCAGCGGCTGCGGGTTCCGCGGGGCCTGCGGAAGCCAGGACTTGCTTTGTGTGACGCTGA
CCTCAACCCAGGAGTCTTGTTGGCCTGGCGAACACGCGCTCCGTCTGGGCCCAGTCTTTG
GCCGCGGAGCCAGTGATATTATGTGTAAAATATGTTGGTGTTCAGGGCAAGGTTCCCCGC
GAGAGGGGAGGGACTGGCCCCCAGGAAGATGTGGTTTTGGCCCAGCCGCGCTCTCTCGAG
CCTTCCCTTTCTGCAACCCTTTACCTCCGGGGCGGCTTCGCCCGAGGGGACTTGGGGCGC
CCTTGGCTGCTGAGGGCAGCCGCCAGAGGAGGAAGGAGATGGTCCCCCGCAGGCTGCTGG
GGACTCTTCTCCCGCGGGGGCCTCAGCTAGCAGCTCCCCACCCTCAGGCGCTCACTCAGG
GCTGTTTTGACGGGCACAGACCGTTTTGTTTTAGATGAAACCCGGCTGCTGTGTCATGGG
GACGGTGGGGGCTGCCGGCTTCTGTTCAGGAGGAAAGCTTCATCCTGTCCTACCTGGCCC
TGTCTTTGCAGGAAGTTGGACCAAGTCCGAATCAGATTAATCCCCCTAACCCCTTAAGTG
TGTAATGCTGTTAGCTGAGTCACTCTTTGGCTTGAGTCTAGAAATAACGTGATTAGAGCA
TCAATCTTGTGCTCCTTGGACTTGGCGAATGTTCTCTCCTTGTTTTCCGGGCTTTGAGGA
GCATGACACGGTTTAAGACAAAACACAGTTTACTTAAATGAAGACATTAATAAAATTTAC
AAAACTGAAAAAAAAAAAAAAAAAGCCTTTTCCATACCGAAATGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCTCGCCGGGGCGCTGAGTTCCGGGGTTCGGGGCTCGGCCCCTCCGCCCACCGCTCT
TTGCCGCTGCTGTCCTGAGTCCTGCGCAGACCCCCGCCACTTGTGTTTCCGCCACCCCCT
CGGATGAAGCAGCTTTGGCCCACGGTTTCGGAGAGAGGTGGGGGGCAGTGCCTCCTCGAG
GCAGCGGCTGCGGGTTCCGCGGGGCCTGCGGAAGCCAGGACTTGCTTTGTGTGACGCTGA
CCTCAACCCAGGAGTCTTGTTGGCCTGGCGAACACGCGCTCCGTCTGGGCCCAGTCTTTG
GCCGCGGAGCCAGTGATATTATGTGTAAAATATGTTGGTGTTCAGGGCAAGGTTCCCCGC
GAGAGGGGAGGGACTGGCCCCCAGGAAGATGTGGTTTTGGCCCAGCCGCGCTCTCTCGAG
CCTTCCCTTTCTGCAACCCTTTACCTCCGGGGCGGCTTCGCCCGAGGGGACTTGGGGCGC
CCTTGGCTGCTGAGGGCAGCCGCCAGAGGAGGAAGGAGATGGTCCCCCGCAGGCTGCTGG
GGACTCTTCTCCCGCGGGGGCCTCAGCTAGCAGCTCCCCACCCTCAGGCGCTCACTCAGG
GCTGTTTTGACGGGCACAGACCGTTTTGTTTTAGATGAAACCCGGCTGCTGTGTCATGGG
GACGGTGGGGGCTGCCGGCTTCTGTTCAGGAGGAAAGCTTCATCCTGTCCTACCTGGCCC
TGTCTTTGCAGGAAGTTGGACCAAGTCCGAATCAGATTAATCCCCCTAACCCCTTAAGTG
TGTAATGCTGTTAGCTGAGTCACTCTTTGGCTTGAGTCTAGAAATAACGTGATTAGAGCA
TCAATCTTGTGCTCCTTGGACTTGGCGAATGTTCTCTCCTTGTTTTCCGGGCTTTGAGGA
GCATGACACGGTTTAAGACAAAACACAGTTTACTTAAATGAAGACATTAATAAAATTTAC
AAAACTGAAAAAAAAAAAAAAAAAGCCTTTTCCATACCGAAATGCTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               211-968, gnl|bosTau2|chr19 (40193336-40192542)
               

               
               211-968, gnl|Hg17|chr17 (58865136-58863997)
               

               
               211-968, gnl|Mm7|chr11 (106044084-106043250)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-968, gnl|bosTau2|chr19 (40193336-40192542)
               

               
               211-968, gnl|Hg17|chr17 (58865136-58863997)
               

               
               211-968, gnl|Mm7|chr11 (106044084-106043250)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               clu (0.239292)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               clu (0.239292)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	211-968, gnl\|bosTau2\|chr19 (40193336-40192542)
	211-968, gnl\|Hg17\|chr17 (58865136-58863997)
	211-968, gnl\|Mm7\|chr11 (106044084-106043250)

	cov (0.396458)
	clu (0.239292)
	nlu (0.191681)
	ton (0.1755)
	rec (0.17307)
	nco (0.161734)
	cst (0.140036)
	ute (0.132784)
	cly (0.120642)
	jca (0.11396)
	jej (0.0989218)