Ss1.1-Pig4-TMW8066M04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGTCCCCTGAGTTGGTGGAGAGCCTCTGTCTTCCCTACAATAAATCTCTAACACCTAC CTCCAGTGCGCACTTAGGGGGTTAGTCCGGGCCGAGAGGTCTGTGCACCTGCAGACTGTG ACAACCTAGTGACGATTCAGGAACCTCACCCTGTGGATCTCCAGCCTGGTCTTTGCCACT GGCTGAGCGTGAACCTTGCACTCCAAACTTCTTGAGTCTCGTTTCTGAAGGAAAGTCATT TGGGATTCCCACTACCCCTCCATTTCAGTCCTCTTCTCTTCACCTGTTTCCAGGACTCCT CTGCAACATTTGCAACCTTTTTGCACTAAAGTAAGCAGGAGTCGGCGAGTGCCCATCAGA CAGATGTCTCCTGAGATGCTTAGCCGAGCCTCAGCGCTTCTAGACCCAGAGCCCCCCTTA AACTCCTCTTGTGAATTACCCCGGATTTTCCTTTTGGGGTGCAGAGCAGGAGTGGGGCGA GAATTTGAAGATGAAACTGCTTCCTTGTGAACTAACAATATATTTTAGCCATAAGTGTTT GTGATGGACAGAATGTTATAGGAATTTACATGCAGTGGGTTTTCTGGTAGAATGAGGTAT TCAGCTCTTGAGCAGATTTAAATCTGGCTGAATCCTGAGGCCACTGTGAATTTGCTGATG TTCTTCCAACTCAGTCGAGTGATTTTAAGGTTTTCAAAATCTTCTATGGCTCTTTTTTTA TATATCTAGTAGATTACATGTAGATAATTCACTGTGTATATAAAGCTGAATTTCAACCAA CTTTAATACTAAGACCTGCCCATTCTGGGGCATTCATCTTTGATGTTCTTCCTTTTCCCA TTTCAGAAGTGTCAATGCCTGTCCCAGTCCTGGTTTTCCATTTTCAGACCGCTCTAGCAC TACACTCTTTTAACCAACCGTGATGCCACGTAACTTCAACACGGCAGACAAAAGCAGAAA TAACTAACTTGTCCTAGAAGAGAAAGTCCAGTGTGTGTATCATCACGGAAATACTGTATT CATGGACTGGAATAGGAAATGCTATGACTATGCTCCTCCTTGGTGTGTATCTTATTGTGT GAGGTTGCTGTGATTGAGATAGTTAAATATATGCTAATTTAAAAATGCAGATGTTTTGCT TTTGATTTCTACCAAGAGTTGAAATGTTGAGAGATAATTTAAAAAAATAATAATAAAGTG TCTCTCCATTGTTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGTCCCCTGAGTTGGTGGAGAGCCTCTGTCTTCCCTACAATAAATCTCTAACACCTAC CTCCAGTGCGCACTTAGGGGGTTAGTCCGGGCCGAGAGGTCTGTGCACCTGCAGACTGTG ACAACCTAGTGACGATTCAGGAACCTCACCCTGTGGATCTCCAGCCTGGTCTTTGCCACT GGCTGAGCGTGAACCTTGCACTCCAAACTTCTTGAGTCTCGTTTCTGAAGGAAAGTCATT TGGGATTCCCACTACCCCTCCATTTCAGTCCTCTTCTCTTCACCTGTTTCCAGGACTCCT CTGCAACATTTGCAACCTTTTTGCACTAAAGTAAGCAGGAGTCGGCGAGTGCCCATCAGA CAGATGTCTCCTGAGATGCTTAGCCGAGCCTCAGCGCTTCTAGACCCAGAGCCCCCCTTA AACTCCTCTTGTGAATTACCCCGGATTTTCCTTTTGGGGTGCAGAGCAGGAGTGGGGCGA GAATTTGAAGATGAAACTGCTTCCTTGTGAACTAACAATATATTTTAGCCATAAGTGTTT GTGATGGACAGAATGTTATAGGAATTTACATGCAGTGGGTTTTCTGGTAGAATGAGGTAT TCAGCTCTTGAGCAGATTTAAATCTGGCTGAATCCTGAGGCCACTGTGAATTTGCTGATG TTCTTCCAACTCAGTCGAGTGATTTTAAGGTTTTCAAAATCTTCTATGGCTCTTTTTTTA TATATCTAGTAGATTACATGTAGATAATTCACTGTGTATATAAAGCTGAATTTCAACCAA CTTTAATACTAAGACCTGCCCATTCTGGGGCATTCATCTTTGATGTTCTTCCTTTTCCCA TTTCAGAAGTGTCAATGCCTGTCCCAGTCCTGGTTTTCCATTTTCAGACCGCTCTAGCAC TACACTCTTTTAACCAACCGTGATGCCACGTAACTTCAACACGGCAGACAAAAGCAGAAA TAACTAACTTGTCCTAGAAGAGAAAGTCCAGTGTGTGTATCATCACGGAAATACTGTATT CATGGACTGGAATAGGAAATGCTATGACTATGCTCCTCCTTGGTGTGTATCTTATTGTGT GAGGTTGCTGTGATTGAGATAGTTAAATATATGCTAATTTAAAAATGCAGATGTTTTGCT TTTGATTTCTACCAAGAGTTGAAATGTTGAGAGATAATTTAAAAAAATAATAATAAAGTG TCTCTCCATTGTTAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 212-353, - strand, RNAz p=0.869453 | |
| 635-725, - strand, RNAz p=0.94218 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 212-353, - strand, RNAz p=0.869453 | |
| 635-725, - strand, RNAz p=0.94218 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 4-392, gnl|bosTau2|chr13 (59398141-59398527) | |
| 4-392, gnl|canFam2|chr24 (39419123-39418704) | |
| 4-392, gnl|dasNov1|scaffold_33350 (9-410) | |
| 4-392, gnl|echTel1|scaffold_50942 (5038-4716) | |
| 4-392, gnl|hg17|chr13 (55689853-55690289) | |
| 4-392, gnl|Hg17|chr20 (47954606-47954197) | |
| 4-392, gnl|mm7|chr2 (167223205-167222824) | |
| 4-392, gnl|Mm7|chr2 (167223108-167222752) | |
| 4-392, gnl|monDom2|scaffold_1 (161418265-161417769) | |
| 4-392, gnl|oryCun1|scaffold_99550 (9555-9107) | |
| 4-392, gnl|panTro1|chr14_random (22676679-22677115) | |
| 4-392, gnl|rheMac2|chr17 (35132346-35132781) | |
| 4-392, gnl|rn3|chr3 (158538219-158537867) | |
| 438-1215, gnl|bosTau2|chr13 (59398547-59399331) | |
| 438-1215, gnl|canFam2|chr24 (39417773-39418303) | |
| 438-1215, gnl|dasNov1|scaffold_33350 (1322-804) | |
| 438-1215, gnl|echTel1|scaffold_50942 (3617-4134) | |
| 438-1215, gnl|galGal2|chr20 (13418967-13418435) | |
| 438-1215, gnl|hg17|chr20 (47953309-47953850) | |
| 438-1215, gnl|Hg17|chr20 (47954177-47953335) | |
| 438-1215, gnl|loxAfr1|scaffold_134150 (4577-4043) | |
| 438-1215, gnl|mm7|chr2 (167222027-167222466) | |
| 438-1215, gnl|Mm7|chr2 (167222735-167222053) | |
| 438-1215, gnl|monDom2|scaffold_1 (161416798-161417281) | |
| 438-1215, gnl|oryCun1|scaffold_99550 (8126-8594) | |
| 438-1215, gnl|panTro1|chr21 (50654011-50654546) | |
| 438-1215, gnl|rheMac2|chr10 (14580547-14580014) | |
| 438-1215, gnl|rn3|chr3 (158537053-158537498) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-392, gnl|bosTau2|chr13 (59398141-59398527) | |
| 4-392, gnl|canFam2|chr24 (39419123-39418704) | |
| 4-392, gnl|dasNov1|scaffold_33350 (9-410) | |
| 4-392, gnl|echTel1|scaffold_50942 (5038-4716) | |
| 4-392, gnl|hg17|chr13 (55689853-55690289) | |
| 4-392, gnl|Hg17|chr20 (47954606-47954197) | |
| 4-392, gnl|mm7|chr2 (167223205-167222824) | |
| 4-392, gnl|Mm7|chr2 (167223108-167222752) | |
| 4-392, gnl|monDom2|scaffold_1 (161418265-161417769) | |
| 4-392, gnl|oryCun1|scaffold_99550 (9555-9107) | |
| 4-392, gnl|panTro1|chr14_random (22676679-22677115) | |
| 4-392, gnl|rheMac2|chr17 (35132346-35132781) | |
| 4-392, gnl|rn3|chr3 (158538219-158537867) | |
| 438-1215, gnl|bosTau2|chr13 (59398547-59399331) | |
| 438-1215, gnl|canFam2|chr24 (39417773-39418303) | |
| 438-1215, gnl|dasNov1|scaffold_33350 (1322-804) | |
| 438-1215, gnl|echTel1|scaffold_50942 (3617-4134) | |
| 438-1215, gnl|galGal2|chr20 (13418967-13418435) | |
| 438-1215, gnl|hg17|chr20 (47953309-47953850) | |
| 438-1215, gnl|Hg17|chr20 (47954177-47953335) | |
| 438-1215, gnl|loxAfr1|scaffold_134150 (4577-4043) | |
| 438-1215, gnl|mm7|chr2 (167222027-167222466) | |
| 438-1215, gnl|Mm7|chr2 (167222735-167222053) | |
| 438-1215, gnl|monDom2|scaffold_1 (161416798-161417281) | |
| 438-1215, gnl|oryCun1|scaffold_99550 (8126-8594) | |
| 438-1215, gnl|panTro1|chr21 (50654011-50654546) | |
| 438-1215, gnl|rheMac2|chr10 (14580547-14580014) | |
| 438-1215, gnl|rn3|chr3 (158537053-158537498) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ton (0.1755) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ldo (0.0970026) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ldo (0.0970026) |