Non-Coding RNA Search

Ss1.1-Pig4-TMW8066M15.3

Sequence:


               
               CCGTAAAGCAGCTCGGCCGAATCGGCGGCCGCTGTTCCCGGGCGGCGGCGGCGCCATGGA
GGCGCGCTTCACGCGCGGGAAGTCGGCGCTGCTGGAGCGCGCACTGGCCCGGCCGCGCAC
GGAGGTGAGCCTGAGCGCCTTCGCGCTGCTCTTCTCCGAGCTGGTGCAGCACTGCCAGAG
CCGTGTCTTCTCCGTGGCGGAGCTGCAGGCGCGCCTGGCCGCGCTGGGCCGCCAGGTGGG
CGCCCGCGTTCTGGATGCGCTGGTGGCTCGAGAAAAGGGTGCCCGGCGCGAAACCAAGGT
GTTGGGCGCCCTGCTCTTCGTTAAGGGCGCCGTGTGGAAGGCGCTCTTTGGCAAGGAGGC
CGACAAGCTGGAGCAGGCCAACGACGACGCGCGCACCTTCTATATCATCGAGCGGGAGCC
GCTCATCAACACCTACATCTCCGTGCCCAAGGAGAACAGCACGCTCAACTGCGCCAGCTT
CACGGCGGGCATCGTGGAGGCGGTGCTCACGCACAGTGGTTTCCCCGCCAAGGTCACGGC
CCACTGGCACAAGGGCACCACGCTCATGATCAAGTTCGAGGAGGCGGTCATTGCCCGAGA
CCGGGCCCTGGAGGGCCGCTGATCCCACGCAGATAAAGGATGCAGATTGCTCCCTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTAAAGCAGCTCGGCCGAATCGGCGGCCGCTGTTCCCGGGCGGCGGCGGCGCCATGGA
GGCGCGCTTCACGCGCGGGAAGTCGGCGCTGCTGGAGCGCGCACTGGCCCGGCCGCGCAC
GGAGGTGAGCCTGAGCGCCTTCGCGCTGCTCTTCTCCGAGCTGGTGCAGCACTGCCAGAG
CCGTGTCTTCTCCGTGGCGGAGCTGCAGGCGCGCCTGGCCGCGCTGGGCCGCCAGGTGGG
CGCCCGCGTTCTGGATGCGCTGGTGGCTCGAGAAAAGGGTGCCCGGCGCGAAACCAAGGT
GTTGGGCGCCCTGCTCTTCGTTAAGGGCGCCGTGTGGAAGGCGCTCTTTGGCAAGGAGGC
CGACAAGCTGGAGCAGGCCAACGACGACGCGCGCACCTTCTATATCATCGAGCGGGAGCC
GCTCATCAACACCTACATCTCCGTGCCCAAGGAGAACAGCACGCTCAACTGCGCCAGCTT
CACGGCGGGCATCGTGGAGGCGGTGCTCACGCACAGTGGTTTCCCCGCCAAGGTCACGGC
CCACTGGCACAAGGGCACCACGCTCATGATCAAGTTCGAGGAGGCGGTCATTGCCCGAGA
CCGGGCCCTGGAGGGCCGCTGATCCCACGCAGATAAAGGATGCAGATTGCTCCCTTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8IUR0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IUR0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-482, + strand, RNAz p=0.928315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-482, + strand, RNAz p=0.928315

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               47-656, gnl|bosTau2|chr7 (12431341-12431950)
               

               
               47-656, gnl|Hg17|chr19 (7653128-7653740)
               

               
               47-656, gnl|Mm7|chr8 (3641427-3642036)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-656, gnl|bosTau2|chr7 (12431341-12431950)
               

               
               47-656, gnl|Hg17|chr19 (7653128-7653740)
               

               
               47-656, gnl|Mm7|chr8 (3641427-3642036)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               cga (0.558191)
               

               
               cov (0.528611)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               hlv (0.417769)
               

               
               fli (0.405762)
               

               
               nep (0.36785)
               

               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               cov (0.528611)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               hlv (0.417769)
               

               
               fli (0.405762)
               

               
               nep (0.36785)
               

               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

	47-656, gnl\|bosTau2\|chr7 (12431341-12431950)
	47-656, gnl\|Hg17\|chr19 (7653128-7653740)
	47-656, gnl\|Mm7\|chr8 (3641427-3642036)

	cga (0.558191)
	cov (0.528611)
	cag (0.453583)
	hyp (0.42851)
	hlv (0.417769)
	fli (0.405762)
	nep (0.36785)
	ill (0.351185)
	fhi (0.339155)
	nje (0.33184)
	csp (0.322373)
	eru (0.240096)
	ebs (0.236602)
	ecc (0.23007)
	nms (0.213858)
	eje (0.197668)
	nlu (0.191681)
	ton (0.1755)
	mcp (0.170648)
	eye (0.170503)
	cki (0.165235)
	pty (0.142714)
	cst (0.140036)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	jej (0.0989218)