Ss1.1-Pig4-TMW8066M23.3
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TCCTGCTTCTCGCGTCCCTCCATGCCAGTGTTTGGTTCCTCTGTCAGTCCCGACCCTCTG
CAGCTTGTCATCCCTTCTGTCTTCTCCTTTGTCCTCTCCAGAGAGCAGGGCGACTATGGA
GGTGGGGGCCCCAGCCCCGTAGCTCTGAGAATTCCACTTGTACTTCTCCCCCTCTTGCTG
AATCTTCCCTCCTGGTCCTGCTTGAGCAGAGCTATTGAAACAGTTTTCGCAGTTTGGTCG
ATTGGCCCCACCTCCTTGCCCCACAACCACCTTTTATAGTCTTCAAACTTCTCTGTGGCC
ATGCAGAGTTGAAGGAGGAACCGACTCTCTGGTTTATTGGAACAGGGTCTTCCGTCTGTA
CCACTAGGGTTTTGTCTTATGTTTACTTCTGGTAACTCTTCTTTCTTTTCCACCCCCACC
CCCCCCCCATCCCTTTCCATCTCCAGCCTAACCAATGCTAGACTTTCCTACTCGAAATGA
GGGGCGGGTGAGACAGGCTGTGATTTTCCTCCTCACCCCTGTTCTGGTCCCTTCATCCGG
CGCTTTTGTATGGGGGTCTGTTAGGACTTCCAGGTGGAAGAAGATGCCTTTTCTCCCTGT
CTGAAGGGAGAGATGAGACTCAGCCCTCTGGGGAAGAAATTAACAAGCCCTGGACCAGCC
CTATGGAGAATGGCACAGGGGAGAGGGGAGCGGGATTTTTCTGGAGAAGAGAATGGAGGA
AACAGCCTCAGTAAAAGGCTTGGAGGTTGGAACTGACAGGGAATGGAAGCACTAATCGTT
CTTTGAGGCCGGAGAGTCCAGGCTCAGGCCTGGCAAAGGCGACTGAGAGATGCCAATGGA
ATTTGAGTTGAAGAAAAGGGCTCAATGGCGCTGAGCAGTGTGGCTCACAGGGGGCTATAT
GGGTTCTGTTTCCTCAGTTACACACGCTTATATATAGACATACACATTTCCATGAACACA
GGACCTGCCTGTGTCTCCAGGTACCCGTGATTTAAGACTCTTTCAAAAGACATGAAAGTG
ATTGGGGTCTGTCTCAGCAGTGTGTGTGTGGGTGGGTGGGTGCATGAATGCATGCACGCA
CATGGGTGCATGTGAGCTGAGTGGGAGGGTGGATTCCTTGCTGACTTCTGGTTCAGCCTT
CTCCCCCACCAGAGAGAAGTAGGCAAAAGGGCCAATCTAGGTCTGGAATAAAGAACAGCC
TGGGGAGCTAGGTCCCCCGGGGGCTCTGGCTGCTGGGTAGCCCAAGGGTAGTGTGGGTCC
CCCTTCTGAAGCTGTCAGGGCTGTGACCAGTGCCCTTATTGCCCGTCCCCTACTTGCTTT
CGGGGAATAGTAGAGGGTCTTTTCCTCGAGGACCCCTGCCTCTGGCATCATAGCCCCTGC
CCTTTGAGTTCTTCACTATTTCCCTCCAGGCCAGAAAGTTCTATTTGAGGAAGGAGAGGA
GAGGACAACGATGATGCCTTTGATCTGGAGTTGGACATGGCTCTATTGGAGCACAGAGGA
GGCTCACATCACCTCCTCCCTCTGCTACTTAACCCAGCTGCTTCGAGGACCCAATGCTCA
GAATATGGAGGCAAGAGGAACAGAAATTTCTCCAAGTGGGAAGGGGCCCCAACAATCCGG
AGAGGACGTCTGTGTGGCTTTCCCTCCCTCCCTACCCCCCAACTCCCACACTGGCCTTTG
TAAATAAATGGTGTGGTCTTTGTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TCCTGCTTCTCGCGTCCCTCCATGCCAGTGTTTGGTTCCTCTGTCAGTCCCGACCCTCTG
CAGCTTGTCATCCCTTCTGTCTTCTCCTTTGTCCTCTCCAGAGAGCAGGGCGACTATGGA
GGTGGGGGCCCCAGCCCCGTAGCTCTGAGAATTCCACTTGTACTTCTCCCCCTCTTGCTG
AATCTTCCCTCCTGGTCCTGCTTGAGCAGAGCTATTGAAACAGTTTTCGCAGTTTGGTCG
ATTGGCCCCACCTCCTTGCCCCACAACCACCTTTTATAGTCTTCAAACTTCTCTGTGGCC
ATGCAGAGTTGAAGGAGGAACCGACTCTCTGGTTTATTGGAACAGGGTCTTCCGTCTGTA
CCACTAGGGTTTTGTCTTATGTTTACTTCTGGTAACTCTTCTTTCTTTTCCACCCCCACC
CCCCCCCCATCCCTTTCCATCTCCAGCCTAACCAATGCTAGACTTTCCTACTCGAAATGA
GGGGCGGGTGAGACAGGCTGTGATTTTCCTCCTCACCCCTGTTCTGGTCCCTTCATCCGG
CGCTTTTGTATGGGGGTCTGTTAGGACTTCCAGGTGGAAGAAGATGCCTTTTCTCCCTGT
CTGAAGGGAGAGATGAGACTCAGCCCTCTGGGGAAGAAATTAACAAGCCCTGGACCAGCC
CTATGGAGAATGGCACAGGGGAGAGGGGAGCGGGATTTTTCTGGAGAAGAGAATGGAGGA
AACAGCCTCAGTAAAAGGCTTGGAGGTTGGAACTGACAGGGAATGGAAGCACTAATCGTT
CTTTGAGGCCGGAGAGTCCAGGCTCAGGCCTGGCAAAGGCGACTGAGAGATGCCAATGGA
ATTTGAGTTGAAGAAAAGGGCTCAATGGCGCTGAGCAGTGTGGCTCACAGGGGGCTATAT
GGGTTCTGTTTCCTCAGTTACACACGCTTATATATAGACATACACATTTCCATGAACACA
GGACCTGCCTGTGTCTCCAGGTACCCGTGATTTAAGACTCTTTCAAAAGACATGAAAGTG
ATTGGGGTCTGTCTCAGCAGTGTGTGTGTGGGTGGGTGGGTGCATGAATGCATGCACGCA
CATGGGTGCATGTGAGCTGAGTGGGAGGGTGGATTCCTTGCTGACTTCTGGTTCAGCCTT
CTCCCCCACCAGAGAGAAGTAGGCAAAAGGGCCAATCTAGGTCTGGAATAAAGAACAGCC
TGGGGAGCTAGGTCCCCCGGGGGCTCTGGCTGCTGGGTAGCCCAAGGGTAGTGTGGGTCC
CCCTTCTGAAGCTGTCAGGGCTGTGACCAGTGCCCTTATTGCCCGTCCCCTACTTGCTTT
CGGGGAATAGTAGAGGGTCTTTTCCTCGAGGACCCCTGCCTCTGGCATCATAGCCCCTGC
CCTTTGAGTTCTTCACTATTTCCCTCCAGGCCAGAAAGTTCTATTTGAGGAAGGAGAGGA
GAGGACAACGATGATGCCTTTGATCTGGAGTTGGACATGGCTCTATTGGAGCACAGAGGA
GGCTCACATCACCTCCTCCCTCTGCTACTTAACCCAGCTGCTTCGAGGACCCAATGCTCA
GAATATGGAGGCAAGAGGAACAGAAATTTCTCCAAGTGGGAAGGGGCCCCAACAATCCGG
AGAGGACGTCTGTGTGGCTTTCCCTCCCTCCCTACCCCCCAACTCCCACACTGGCCTTTG
TAAATAAATGGTGTGGTCTTTGTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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218-376, - strand, RNAmicro p=0.953656 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
218-376, - strand, RNAmicro p=0.953656 |
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1-650, gnl|bosTau2|chr3 (10574435-10575064) |
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1-650, gnl|canFam2|chr7 (44748517-44747931) |
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1-650, gnl|dasNov1|scaffold_9673 (10160-9572) |
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1-650, gnl|echTel1|scaffold_287314 (15824-16443) |
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1-650, gnl|hg17|chr1 (152819188-152819792) |
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1-650, gnl|Hg17|chr1 (152819825-152819192) |
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1-650, gnl|loxAfr1|scaffold_50392 (10255-9619) |
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1-650, gnl|mm7|chr3 (88682595-88682086) |
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1-650, gnl|monDom2|scaffold_59 (1517951-1517241) |
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1-650, gnl|oryCun1|scaffold_134657 (7776-7236) |
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1-650, gnl|panTro1|chr1 (134762297-134762901) |
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1-650, gnl|rheMac2|chr12 (16508620-16508007) |
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1-650, gnl|rn3|chr2 (180634020-180633504) |
| |
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1546-1704, gnl|bosTau2|chr21 (22388552-22388396) |
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1546-1704, gnl|dasNov1|scaffold_14448 (19659-19245) |
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1546-1704, gnl|hg17|chr15 (73192351-73192760) |
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1546-1704, gnl|Mm7|chr3 (88683374-88683517) |
|
1546-1704, gnl|rheMac2|chr7 (53938645-53939136) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-650, gnl|bosTau2|chr3 (10574435-10575064) |
|
1-650, gnl|canFam2|chr7 (44748517-44747931) |
|
1-650, gnl|dasNov1|scaffold_9673 (10160-9572) |
|
1-650, gnl|echTel1|scaffold_287314 (15824-16443) |
|
1-650, gnl|hg17|chr1 (152819188-152819792) |
|
1-650, gnl|Hg17|chr1 (152819825-152819192) |
|
1-650, gnl|loxAfr1|scaffold_50392 (10255-9619) |
|
1-650, gnl|mm7|chr3 (88682595-88682086) |
|
1-650, gnl|monDom2|scaffold_59 (1517951-1517241) |
|
1-650, gnl|oryCun1|scaffold_134657 (7776-7236) |
|
1-650, gnl|panTro1|chr1 (134762297-134762901) |
|
1-650, gnl|rheMac2|chr12 (16508620-16508007) |
|
1-650, gnl|rn3|chr2 (180634020-180633504) |
| |
|
1546-1704, gnl|bosTau2|chr21 (22388552-22388396) |
|
1546-1704, gnl|dasNov1|scaffold_14448 (19659-19245) |
|
1546-1704, gnl|hg17|chr15 (73192351-73192760) |
|
1546-1704, gnl|Mm7|chr3 (88683374-88683517) |
|
1546-1704, gnl|rheMac2|chr7 (53938645-53939136) |
|
clu (0.717875) |
|
ese (0.379507) |
|
cje (0.330469) |
|
cki (0.330469) |
|
cst (0.280073) |
|
cov (0.264306) |
|
ebs (0.236602) |
|
jca (0.22792) |
|
fcc (0.197785) |
|
sto (0.179824) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cli (0.152812) |
|
eli (0.151814) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
clu (0.717875) |
|
ese (0.379507) |
|
cje (0.330469) |
|
cki (0.330469) |
|
cst (0.280073) |
|
cov (0.264306) |
|
ebs (0.236602) |
|
jca (0.22792) |
|
fcc (0.197785) |
|
sto (0.179824) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cli (0.152812) |
|
eli (0.151814) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
jej (0.0989218) |
