Non-Coding RNA Search

Ss1.1-Pig4-TMW8066M24.3

Sequence:


               
               CCCAGGCCCAAGCTCAAGCCCAAGCCCAAGCTCAAGCCCAGGCCCAGGCCCAGGCCTCCC
AGGCATCGCAGCAGCCGCAGCAGCAGCAGCCATCACACTTCCAGTCCCCTGGGGCAGCCC
CCCAGGGTGGGGGTGGCGGGGACAGCAACCCCAACCCTCCACCCCAGTGTTCCTTTGACC
TGACCCCCTATAAGACGGCAGAGCATCATAAGGACATCTGCCTCACTGTCACCACCAGCA
CCATCCAGGTGGAGCACCTGGCCAGCTCGTAGAGACCTGTGCTGCCGTCCCCTGGGAAGA
GGGGAAGAAGTTCTGGTCCCTTCTTTCTCCAGCTCCTCTTGGTGGGAAAAGTCCTCTTCT
TCCTTGACAGGCCACGGCTCCATCTTCTTGGGTCTCAGGCCCAGCCTTCCTTCCCAGGAT
ACTCTCCTTATTCTCAACTCCTCTTCAACAGGAACGTCAGCCCTCCTGATCGGCAGAGGA
GTACTGAGCTGGTGGCGTAATCCAGCAGCCTCCCTGCCTAAGCATAGCTTTTAAAATTGG
GGGTTGGTGCTCAGGGGAGGGGTTTGCTATGACCTCATAGAGACTTTTCCAGAGTGGGCA
CTTACTCTCTCCTCACCCTCATAATCCTCCAAGCTCGGGCTGATAGAGGACTAGAGGCTG
GCCCTCCTGGACGTCAGAGAGGAGGGAGCCCTAAATGCAGCCAGCTTCCTGTTCTAGTCT
TGCCTGCGAAAGAACAGAGGTTTCTCACATAACCCTATCCCTGGGAGCCGTTTTCCCCTC
ATGGTCTCACTTCACTTCCTACCTAGTGCTGGAAGGAGATCTGGAGGGGGGGTCGGACCC
CCTTTATTTGTAAAGGGGCAAGGGCTGAGATGTGGTCCCCAAGGGGCCAGAGATCCCCAA
AGTGGTCGAGGGTGGCTTAGAAGTGTGAGTTATGGGTCTCCTTGGAGCTTCTCCCCTTCT
CTGCCAGCCGGGGCTCAGTGCTCAGTCTCCCTGTCCCCCAACCTAAGCAGCTGTGGGAGC
TGTGAGTTCTTTATAAAACCCCACAAGGAGGGGGCTGCAGAGAAGGGAGAGTGAAGGGCA
AATGCAAGGACTGGACTTAGCTCCCTAGGTGCCACGGTCAGTTGCTGGACATGGATTTAT
ATATAAATATATATATATATAAATATATATATACCCACTCATCACGGCCATCTTTGTTGT
AACCATTTCTGTGTTTATAAATGCATTATCTCTGAGAATTTTCATATTTGATGTTTTGTT
TATTTTTGTCCCTTTTTTTTCCCTCCACCCTGTCTTCTGGCCAACAGCATTTTTATTTCC
TTTTGTCTTTTTTTTTTTTTTTTTTTTTAAATCATGGCAGATTTCAGAGAAAAGAGAAAA
TGAAAAAAAAAATCAGGAAACCAGTTGTTATAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGGCCCAAGCTCAAGCCCAAGCCCAAGCTCAAGCCCAGGCCCAGGCCCAGGCCTCCC
AGGCATCGCAGCAGCCGCAGCAGCAGCAGCCATCACACTTCCAGTCCCCTGGGGCAGCCC
CCCAGGGTGGGGGTGGCGGGGACAGCAACCCCAACCCTCCACCCCAGTGTTCCTTTGACC
TGACCCCCTATAAGACGGCAGAGCATCATAAGGACATCTGCCTCACTGTCACCACCAGCA
CCATCCAGGTGGAGCACCTGGCCAGCTCGTAGAGACCTGTGCTGCCGTCCCCTGGGAAGA
GGGGAAGAAGTTCTGGTCCCTTCTTTCTCCAGCTCCTCTTGGTGGGAAAAGTCCTCTTCT
TCCTTGACAGGCCACGGCTCCATCTTCTTGGGTCTCAGGCCCAGCCTTCCTTCCCAGGAT
ACTCTCCTTATTCTCAACTCCTCTTCAACAGGAACGTCAGCCCTCCTGATCGGCAGAGGA
GTACTGAGCTGGTGGCGTAATCCAGCAGCCTCCCTGCCTAAGCATAGCTTTTAAAATTGG
GGGTTGGTGCTCAGGGGAGGGGTTTGCTATGACCTCATAGAGACTTTTCCAGAGTGGGCA
CTTACTCTCTCCTCACCCTCATAATCCTCCAAGCTCGGGCTGATAGAGGACTAGAGGCTG
GCCCTCCTGGACGTCAGAGAGGAGGGAGCCCTAAATGCAGCCAGCTTCCTGTTCTAGTCT
TGCCTGCGAAAGAACAGAGGTTTCTCACATAACCCTATCCCTGGGAGCCGTTTTCCCCTC
ATGGTCTCACTTCACTTCCTACCTAGTGCTGGAAGGAGATCTGGAGGGGGGGTCGGACCC
CCTTTATTTGTAAAGGGGCAAGGGCTGAGATGTGGTCCCCAAGGGGCCAGAGATCCCCAA
AGTGGTCGAGGGTGGCTTAGAAGTGTGAGTTATGGGTCTCCTTGGAGCTTCTCCCCTTCT
CTGCCAGCCGGGGCTCAGTGCTCAGTCTCCCTGTCCCCCAACCTAAGCAGCTGTGGGAGC
TGTGAGTTCTTTATAAAACCCCACAAGGAGGGGGCTGCAGAGAAGGGAGAGTGAAGGGCA
AATGCAAGGACTGGACTTAGCTCCCTAGGTGCCACGGTCAGTTGCTGGACATGGATTTAT
ATATAAATATATATATATATAAATATATATATACCCACTCATCACGGCCATCTTTGTTGT
AACCATTTCTGTGTTTATAAATGCATTATCTCTGAGAATTTTCATATTTGATGTTTTGTT
TATTTTTGTCCCTTTTTTTTCCCTCCACCCTGTCTTCTGGCCAACAGCATTTTTATTTCC
TTTTGTCTTTTTTTTTTTTTTTTTTTTTAAATCATGGCAGATTTCAGAGAAAAGAGAAAA
TGAAAAAAAAAATCAGGAAACCAGTTGTTATAAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2565089|gb|AAB91451.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2565089|gb|AAB91451.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-249, - strand, RNAz p=0.980496
               

               
               639-758, - strand, RNAz p=0.840808

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-249, - strand, RNAz p=0.980496
               

               
               639-758, - strand, RNAz p=0.840808

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of U80760, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of U80760, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-1266, gnl|bosTau2|chr2 (78799551-78798338)
               

               
               40-1266, gnl|Hg17|chr12 (6647403-6646165)
               

               
               40-1266, gnl|Mm7|chr6 (125062112-125063264)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-1266, gnl|bosTau2|chr2 (78799551-78798338)
               

               
               40-1266, gnl|Hg17|chr12 (6647403-6646165)
               

               
               40-1266, gnl|Mm7|chr6 (125062112-125063264)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	40-249, - strand, RNAz p=0.980496
	639-758, - strand, RNAz p=0.840808

	40-1266, gnl\|bosTau2\|chr2 (78799551-78798338)
	40-1266, gnl\|Hg17\|chr12 (6647403-6646165)
	40-1266, gnl\|Mm7\|chr6 (125062112-125063264)

	fcc (0.197785)
	nep (0.183925)
	duo (0.172801)
	eye (0.170503)
	nco (0.161734)
	csp (0.161186)
	ski (0.146735)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)