Non-Coding RNA Search

Ss1.1-Pig4-TMW8066N10.3

Sequence:


               
               GGACTGGGGTGTGGCAGGGGGAGGGATGGGGGCCCAACTGACCCCTTCCCTGTGGGGGGT
CTCATAGAAATTCCGAGATTTCTCCCCAAAAAAAAGAGAGAAAGAGAAGAGTTGAAGGGC
GCCCAGGGACACCCATCTGCCCAGAGGTCCCCCACTCCTCCAAAAGTAAGGAGAGCTGCG
TCAAGTCTCGGGGAGCCTGAGCAGTCCCAGGATGGGCTTCTCCCTGTAGACTGCTTTCCG
CTTCTGGGAGCGGCCCCCGCAGTCCCCGGCCCCTGGAGTCCTCGATTCCTGCGCTCCTCT
TGTCCGCAGTGGTGGGGCGAAATGCGGGCGTTCGCGGCACCCTCTGGTGAGTCCACTAGG
GGGCGCAGGTAGGCTCTGGAGCCGGGCCTCGGACTTCACCCGGAGCCAAAGGCAAAATCG
TGGGGTTCAGCGCCCTGGGGCACAAGTCCCGACCCTCGCCCACTAGGGAAACGAGAGTGG
CCGGGGCCTGGGAAGGACCCCGTCCCTGCGGTCAGTCCGGGCGCCCGCCCGGCCCCGCCC
GTGGTCACTCGTGCTCCGCCAGCTCGCGGGGGCCGGCGGGGCCGGGCCGCGGCCGCGGCG
GGCTGGTGGCTTCGGCGGGTGCTCCCAGGCCACGCGGGGGCGCACCGGCCCCGGAGGCCC
GCAGTGCCTGGATGCGCCGGCACTCCTGGCAGACACGCACGTGGGTGCAAGGGGTAGGGG
CGGAGGGCCGGGCCCCGCCGGGCGGCCCCGGATCGTCCAGGAGGCGCTGGGGACCCCCGT
GCGCGCCGCCCGCATCCCCGCCCGCGCCGGCAGAGTAGAGCTTGCCGTCGCTGAGGCGCA
TCTCGCGGACAGCACGCAGCGACAGCAGGGCCCGGCTCGGGCCTCCTGGGCGCCGGCGCC
GGCGGGAACGCGAGGTCTTGCGGCAGGACACCGCGTGCCGCAGCTCCTGCAGCATCTCCT
GGCACACCGAGACCTCTTCCGACTCTGCTGACCTCCGCGTGGACCATATGAATTCCATGA
CTGCCACGAAGACGGCAATGATGAGGCCACAGATGAGCACGACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTGGGGTGTGGCAGGGGGAGGGATGGGGGCCCAACTGACCCCTTCCCTGTGGGGGGT
CTCATAGAAATTCCGAGATTTCTCCCCAAAAAAAAGAGAGAAAGAGAAGAGTTGAAGGGC
GCCCAGGGACACCCATCTGCCCAGAGGTCCCCCACTCCTCCAAAAGTAAGGAGAGCTGCG
TCAAGTCTCGGGGAGCCTGAGCAGTCCCAGGATGGGCTTCTCCCTGTAGACTGCTTTCCG
CTTCTGGGAGCGGCCCCCGCAGTCCCCGGCCCCTGGAGTCCTCGATTCCTGCGCTCCTCT
TGTCCGCAGTGGTGGGGCGAAATGCGGGCGTTCGCGGCACCCTCTGGTGAGTCCACTAGG
GGGCGCAGGTAGGCTCTGGAGCCGGGCCTCGGACTTCACCCGGAGCCAAAGGCAAAATCG
TGGGGTTCAGCGCCCTGGGGCACAAGTCCCGACCCTCGCCCACTAGGGAAACGAGAGTGG
CCGGGGCCTGGGAAGGACCCCGTCCCTGCGGTCAGTCCGGGCGCCCGCCCGGCCCCGCCC
GTGGTCACTCGTGCTCCGCCAGCTCGCGGGGGCCGGCGGGGCCGGGCCGCGGCCGCGGCG
GGCTGGTGGCTTCGGCGGGTGCTCCCAGGCCACGCGGGGGCGCACCGGCCCCGGAGGCCC
GCAGTGCCTGGATGCGCCGGCACTCCTGGCAGACACGCACGTGGGTGCAAGGGGTAGGGG
CGGAGGGCCGGGCCCCGCCGGGCGGCCCCGGATCGTCCAGGAGGCGCTGGGGACCCCCGT
GCGCGCCGCCCGCATCCCCGCCCGCGCCGGCAGAGTAGAGCTTGCCGTCGCTGAGGCGCA
TCTCGCGGACAGCACGCAGCGACAGCAGGGCCCGGCTCGGGCCTCCTGGGCGCCGGCGCC
GGCGGGAACGCGAGGTCTTGCGGCAGGACACCGCGTGCCGCAGCTCCTGCAGCATCTCCT
GGCACACCGAGACCTCTTCCGACTCTGCTGACCTCCGCGTGGACCATATGAATTCCATGA
CTGCCACGAAGACGGCAATGATGAGGCCACAGATGAGCACGACAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-198, + strand, RNAz p=0.947156

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-198, + strand, RNAz p=0.947156

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               174-266, + strand, RNAmicro p=0.965078

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               174-266, + strand, RNAmicro p=0.965078

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-975, gnl|bosTau2|chr18 (44736226-44737177)
               

               
               1-975, gnl|Hg17|chr19 (47194347-47195293)
               

               
               1-975, gnl|Mm7|chr7 (21799370-21800283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-975, gnl|bosTau2|chr18 (44736226-44737177)
               

               
               1-975, gnl|Hg17|chr19 (47194347-47195293)
               

               
               1-975, gnl|Mm7|chr7 (21799370-21800283)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               ecc (0.115035)

	1-975, gnl\|bosTau2\|chr18 (44736226-44737177)
	1-975, gnl\|Hg17\|chr19 (47194347-47195293)
	1-975, gnl\|Mm7\|chr7 (21799370-21800283)