Non-Coding RNA Search

Ss1.1-Pig4-TMW8066N18.3

Sequence:


               
               CAATCTCCAAGGGACTTTACTGGCATTCCTACCTCCCAGAGCTCGATTCCTTACTTTGAA
ATCGTCTTCTTTTGGGGGCAGCTGTGGCAGTGAGGAATTTACTCCTGGAAAGCAACAGCC
AACTCGGGAGTACTTACAAGAACAAGTTCGCCATTGCATTGTATCTGTATGTATGGCTCA
TCCTGTGTGATGAATACTGTATGTGTGTCCTCACTGAAGAGAATGCTGGCTTGAACACTT
TATGATGTTATTACTTGCTTTTCTTATGTTCCAAAAATAAGATGTGGTTATCATTGATTT
TTTCCACGGTACACATCAGATAGATGCCACGGATCTTATAGATTTACATGCCTTTGTTTT
ACTATTTAGAAGGTGTAACTGGCGGTGTTTTTGATAGGATGTGAAACTGGCTCATCCTCA
GGCCTGGGGTCCAGGTACCAGGATGGGCTTTGACAAAGTCAGCCTGTGGAAGCTGCCTCA
GGAAGTCTCAGTAAATGCTTCCTCGGTTTAAAGACTTTAGTTGGCATAGGGATACTGCAC
AAGCCATTGGCCTGCAAAGTTGCTATGACACGTGTTCTGTAACAATAATTAAATGTCTTG
TGCAAAGATTTCTGGAAGAGAAAGAGAATCAGCCTGGAGCCTTCTGTCAGTGCCCCTGAT
GTGCTCAGGGCTGGGGTGTGCCAGACACTCAAAGCCTTGTACAAACAAGTGTGCTCACTC
CCCTTCCAGGCATATCTCACTGTACGTGATCTTGGGTCACAATAGGATCCTTGATAGGAT
CCTTTTAGAGGATCTAGAAAACTTGGAGGTTTTAGTTATTCATGTCTATTAAAAATTTCC
TCATTAAAAGGGAGTCCTCAGGTTGGGGCTGTTCAGGGGAAGGGTGTCACCACGCACAAT
GAATTGTAACTTTAAAAAGCATGTTGATTTTTTTTTATAAATTTAAGTGTGCTTGGGAAT
CCCCTGAATTTTGTGCAATAAACTATTTTTGGTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATCTCCAAGGGACTTTACTGGCATTCCTACCTCCCAGAGCTCGATTCCTTACTTTGAA
ATCGTCTTCTTTTGGGGGCAGCTGTGGCAGTGAGGAATTTACTCCTGGAAAGCAACAGCC
AACTCGGGAGTACTTACAAGAACAAGTTCGCCATTGCATTGTATCTGTATGTATGGCTCA
TCCTGTGTGATGAATACTGTATGTGTGTCCTCACTGAAGAGAATGCTGGCTTGAACACTT
TATGATGTTATTACTTGCTTTTCTTATGTTCCAAAAATAAGATGTGGTTATCATTGATTT
TTTCCACGGTACACATCAGATAGATGCCACGGATCTTATAGATTTACATGCCTTTGTTTT
ACTATTTAGAAGGTGTAACTGGCGGTGTTTTTGATAGGATGTGAAACTGGCTCATCCTCA
GGCCTGGGGTCCAGGTACCAGGATGGGCTTTGACAAAGTCAGCCTGTGGAAGCTGCCTCA
GGAAGTCTCAGTAAATGCTTCCTCGGTTTAAAGACTTTAGTTGGCATAGGGATACTGCAC
AAGCCATTGGCCTGCAAAGTTGCTATGACACGTGTTCTGTAACAATAATTAAATGTCTTG
TGCAAAGATTTCTGGAAGAGAAAGAGAATCAGCCTGGAGCCTTCTGTCAGTGCCCCTGAT
GTGCTCAGGGCTGGGGTGTGCCAGACACTCAAAGCCTTGTACAAACAAGTGTGCTCACTC
CCCTTCCAGGCATATCTCACTGTACGTGATCTTGGGTCACAATAGGATCCTTGATAGGAT
CCTTTTAGAGGATCTAGAAAACTTGGAGGTTTTAGTTATTCATGTCTATTAAAAATTTCC
TCATTAAAAGGGAGTCCTCAGGTTGGGGCTGTTCAGGGGAAGGGTGTCACCACGCACAAT
GAATTGTAACTTTAAAAAGCATGTTGATTTTTTTTTATAAATTTAAGTGTGCTTGGGAAT
CCCCTGAATTTTGTGCAATAAACTATTTTTGGTTAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               55-997, gnl|bosTau2|chr17 (23162616-23161657)
               

               
               55-997, gnl|Hg17|chr12 (131956785-131955852)
               

               
               55-997, gnl|Mm7|chr5 (109392016-109392993)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-997, gnl|bosTau2|chr17 (23162616-23161657)
               

               
               55-997, gnl|Hg17|chr12 (131956785-131955852)
               

               
               55-997, gnl|Mm7|chr5 (109392016-109392993)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               cov (0.132153)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               cov (0.132153)

	55-997, gnl\|bosTau2\|chr17 (23162616-23161657)
	55-997, gnl\|Hg17\|chr12 (131956785-131955852)
	55-997, gnl\|Mm7\|chr5 (109392016-109392993)

	fcc (0.39557)
	ece (0.229305)
	fli (0.202881)
	mgm (0.180343)
	cut (0.169924)
	spl (0.143184)
	ste (0.135208)
	cov (0.132153)