Non-Coding RNA Search

Ss1.1-Pig4-TMW8066N23.3

Sequence:


               
               GCGGCCGCAACTAGTTTTTTAACTCAGTTTCTAGTTAACTCTTCTTGTGATAGTAAATAA
ATAGTGTATATAGCTGAGAAGTAAAACGCCAGCAAATTATTTTCATTGTCTTTATAGTGT
CAGGTTTCGCTTTGCATTCCAGTGGACTTTTATTTAATGTTATTCTGATAAATCTCTCTT
AAAATAATGTGATTTTCCAAAGATCAGCACTGTCTTTTTACAAAATTTTTGTTTTGCTAT
AGGACATAATTGAAATTTTTTACCTATAAAATAGTTTAAGGTTCACATATGCTATGATAT
TCAAACTTAACCCTTATGAAAGTTATGTTTAGCCATCTTTCAACGGTAAATTATGTAAAA
AGCTATTTAGAGAGCATAGCGAATTGGGATAAAAGGGGTTTCAGTGGCTTAGTTTTTTTT
TTAACTTTAAAGAAAAATAAGAATAAATCTAAACTATCTTTAGAAGCAAAATTTTTAAAA
TTCTCTTATCTCATTACCTTCTTAGTAATAATTAGAATTTTTTCTTCCCTTTTCTTCTCT
TTTCATAATAAACAATCATTAACGCTACCTTTAGTTTACATGTTTAATAGACTAGAAAGA
ACTTTGAGAATTCTTTTCAGACACAAATCATTTTTTAAAATAGATAATTGTTCATTCAAG
GCAAATATAATTAGTATTAGTTTGTAATTTCTATATATATTACATGTATAAATATATATA
AATATTAGTTAATTACTAACATTATATAGAAATCTGGCATAGTTATAATTGCTGGATTTG
AGCAAATGGGGATCATGAAAGAACTGACAACCTGCAAGTCTTAAGGAGTAAAACTATTGT
CAGTATCAGCTTTTTTAACCTTTTGAGTAATTCTCTTAGTAAATTATTCTCCACATCTAG
TCTAATTTCTTTAATTTTGCAGTTTTTTTCATTTTATTTCTCCATGAGTAATGAGCAGAT
GTGAAATAACTCTTCCCAAACTAAAATAATTCCTATCAGCTAATCTTTGTTATCACAAGA
TACACTATTTTTGCCCATGAATTTAGTAACCATTTTTAACATAGTCAGTCATTTCAGATT
TGTTAGCTGTAAGGAAAATTGTGCCACATATTGTTCCACTACCTTTCTTCCCTTTAATCT
CCTCCCTTGAGTCATAGAGCAGTGTTTACTTTAGCAGTATTTGTCTTAATAAGTAATTTA
GTGTCCCTCATAACTGTCAGCCTTAGTTTCACTTTAGTTTTTCTAATTTTAATATCTCCT
TGCTAGGAATTTTTTAAATTTATCACATACTTGTTAATGTATAACAATGTATAATTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCAACTAGTTTTTTAACTCAGTTTCTAGTTAACTCTTCTTGTGATAGTAAATAA
ATAGTGTATATAGCTGAGAAGTAAAACGCCAGCAAATTATTTTCATTGTCTTTATAGTGT
CAGGTTTCGCTTTGCATTCCAGTGGACTTTTATTTAATGTTATTCTGATAAATCTCTCTT
AAAATAATGTGATTTTCCAAAGATCAGCACTGTCTTTTTACAAAATTTTTGTTTTGCTAT
AGGACATAATTGAAATTTTTTACCTATAAAATAGTTTAAGGTTCACATATGCTATGATAT
TCAAACTTAACCCTTATGAAAGTTATGTTTAGCCATCTTTCAACGGTAAATTATGTAAAA
AGCTATTTAGAGAGCATAGCGAATTGGGATAAAAGGGGTTTCAGTGGCTTAGTTTTTTTT
TTAACTTTAAAGAAAAATAAGAATAAATCTAAACTATCTTTAGAAGCAAAATTTTTAAAA
TTCTCTTATCTCATTACCTTCTTAGTAATAATTAGAATTTTTTCTTCCCTTTTCTTCTCT
TTTCATAATAAACAATCATTAACGCTACCTTTAGTTTACATGTTTAATAGACTAGAAAGA
ACTTTGAGAATTCTTTTCAGACACAAATCATTTTTTAAAATAGATAATTGTTCATTCAAG
GCAAATATAATTAGTATTAGTTTGTAATTTCTATATATATTACATGTATAAATATATATA
AATATTAGTTAATTACTAACATTATATAGAAATCTGGCATAGTTATAATTGCTGGATTTG
AGCAAATGGGGATCATGAAAGAACTGACAACCTGCAAGTCTTAAGGAGTAAAACTATTGT
CAGTATCAGCTTTTTTAACCTTTTGAGTAATTCTCTTAGTAAATTATTCTCCACATCTAG
TCTAATTTCTTTAATTTTGCAGTTTTTTTCATTTTATTTCTCCATGAGTAATGAGCAGAT
GTGAAATAACTCTTCCCAAACTAAAATAATTCCTATCAGCTAATCTTTGTTATCACAAGA
TACACTATTTTTGCCCATGAATTTAGTAACCATTTTTAACATAGTCAGTCATTTCAGATT
TGTTAGCTGTAAGGAAAATTGTGCCACATATTGTTCCACTACCTTTCTTCCCTTTAATCT
CCTCCCTTGAGTCATAGAGCAGTGTTTACTTTAGCAGTATTTGTCTTAATAAGTAATTTA
GTGTCCCTCATAACTGTCAGCCTTAGTTTCACTTTAGTTTTTCTAATTTTAATATCTCCT
TGCTAGGAATTTTTTAAATTTATCACATACTTGTTAATGTATAACAATGTATAATTTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               262-419, - strand, RNAz p=0.601941

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-419, - strand, RNAz p=0.601941

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               14-1313, gnl|bosTau2|chr14 (34936869-34935602)
               

               
               14-1313, gnl|Hg17|chr8 (109568370-109569952)
               

               
               14-1313, gnl|Mm7|chr15 (43572756-43573862)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1313, gnl|bosTau2|chr14 (34936869-34935602)
               

               
               14-1313, gnl|Hg17|chr8 (109568370-109569952)
               

               
               14-1313, gnl|Mm7|chr15 (43572756-43573862)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	14-1313, gnl\|bosTau2\|chr14 (34936869-34935602)
	14-1313, gnl\|Hg17\|chr8 (109568370-109569952)
	14-1313, gnl\|Mm7\|chr15 (43572756-43573862)