Non-Coding RNA Search

Ss1.1-Pig4-TMW8066O13.3

Sequence:


               
               TTTTTTTTTTTTTTTGTACAGACTATTGAGTTGTTGAGATCACAGGGGAATTTCCTAATT
TGGTCTTTATCCTTCACTTAAACTAAGCTAAAACACTTTCCACAGATTATCCTCCACATC
TCCCACAGATCATCATTATGCCTTGATAGTGCGATTCTGTAAGATAGCACTTATGCAAAA
GTTTATGAACATAAAATATCTTAGCAACCAAACTGAAATGTATGTAAATACTGATTACAG
AGGAATTTCATTAGGAAGAAGGTAAAGAAACATCTTTGAGTAGCCTACCTTGATTATTGT
CAAGTTCACAGCCAGCTTTATATTTTAAAGGCTTTGGGTTTGAAATTAGGTCAACTGCAT
GCAGCTTTGCTGATAAATGAATAATTACTTTTGATGCCATTTATGAGAAAAGACTTCAAT
ATCTGTTGCCTGTAATATTTAAGAAAAATGACTGTTTCTACTCTCTGTATCTGATTTTAA
AAGGAAAAATATTCATACCTAGCTTTTAGGTAATTGACTTTGAATTCTTACAAGCAAAGG
TCATTGTGTTTTTCTTGAATAGACATCTAATAAATTTTGCTTGGAAGTATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTGTACAGACTATTGAGTTGTTGAGATCACAGGGGAATTTCCTAATT
TGGTCTTTATCCTTCACTTAAACTAAGCTAAAACACTTTCCACAGATTATCCTCCACATC
TCCCACAGATCATCATTATGCCTTGATAGTGCGATTCTGTAAGATAGCACTTATGCAAAA
GTTTATGAACATAAAATATCTTAGCAACCAAACTGAAATGTATGTAAATACTGATTACAG
AGGAATTTCATTAGGAAGAAGGTAAAGAAACATCTTTGAGTAGCCTACCTTGATTATTGT
CAAGTTCACAGCCAGCTTTATATTTTAAAGGCTTTGGGTTTGAAATTAGGTCAACTGCAT
GCAGCTTTGCTGATAAATGAATAATTACTTTTGATGCCATTTATGAGAAAAGACTTCAAT
ATCTGTTGCCTGTAATATTTAAGAAAAATGACTGTTTCTACTCTCTGTATCTGATTTTAA
AAGGAAAAATATTCATACCTAGCTTTTAGGTAATTGACTTTGAATTCTTACAAGCAAAGG
TCATTGTGTTTTTCTTGAATAGACATCTAATAAATTTTGCTTGGAAGTATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-591, gnl|bosTau2|chr27 (9363799-9364387)
               

               
               1-591, gnl|Hg17|chr4 (186882402-186881826)
               

               
               1-591, gnl|Mm7|chr8 (44605177-44605762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-591, gnl|bosTau2|chr27 (9363799-9364387)
               

               
               1-591, gnl|Hg17|chr4 (186882402-186881826)
               

               
               1-591, gnl|Mm7|chr8 (44605177-44605762)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               aor (0.585823)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               mgp (0.230681)
               

               
               mcp (0.170648)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               mgp (0.230681)
               

               
               mcp (0.170648)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	1-591, gnl\|bosTau2\|chr27 (9363799-9364387)
	1-591, gnl\|Hg17\|chr4 (186882402-186881826)
	1-591, gnl\|Mm7\|chr8 (44605177-44605762)

	aor (0.585823)
	sag (0.36543)
	mgm (0.360685)
	fhi (0.339155)
	vin (0.332557)
	fco (0.314416)
	mgp (0.230681)
	mcp (0.170648)
	hlv (0.139256)
	che (0.136314)
	lyg (0.133103)
	bla (0.124347)
	tra (0.123092)
	med (0.116252)
	ldo (0.0970026)