Non-Coding RNA Search

Ss1.1-Pig4-TMW8066O15.3

Sequence:


               
               CGCGGTGGGAGGCAGCCTGGGACCGGCCCACGGAGTTGCAGCCGCCCATCGCTCCCTCCT
TGCGGACATCATGCTCCAGTTCCTGCTTGGATTTACTCTTGGCAACGTGGTTGGAATGTA
TCTGGCTCAGAACTATGATATACCAAACCTGGCTAAAAAACTTGAAGACATTAAAAAGGA
CCTGGATGCCAAGAAGAAACCCCCTAGTTCATGAGGCCGACTCCAGCCCTGCCTTCTGGA
TTCTACTATTGTCGAGGGCCTTCTTTACTCTGAACCAAAAGCTTTTGTTTTAATTTCCAG
CCTCAGCAGTTTTCTTCATTGTGTTGCCTTAGAGCACAAATGGGGCCACAAGTTAAGAAC
TACCCTTAATTTTCCAACAGCATCACTTCTTCCCTTGCTCCTTCCAGCCACTTGGAAGGC
CCTGAAACTGGAATTATGGTGCTAGATTAGTAAACATGACCTTTAATTAGTAGTCTCTCC
CTTTTTCTTTGGAATTTCTATTACCTTTTTTCAAAAGAAAAATTGATAAATTTTGTATAG
CAGATGAGATATAAATAATGCTGATTTCACATTCTAGCAATTATATAATGGGTATTTAAA
CATTCGGTACTTAATTATGTTATTTCAAAATAGTAGTTAAAATCAAGAAGCCAGTTCCTG
GTGAATTATCCATTGTTGTCAGGAAGCTGCATAGTTGCTATTGTAACCACTATATCAATT
TGCTATTCATTAACCAAGAAACAGTGTTCTGAGAACCCTGAGAACTTACAAATATTTAAA
ATAATGGCCGTTGTCCTCAATAGTATTCCTAGTCTAATATTCATGTTGTTTTTTAATGAT
GTGTTTGATCTGGTTCTTTTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGTGGGAGGCAGCCTGGGACCGGCCCACGGAGTTGCAGCCGCCCATCGCTCCCTCCT
TGCGGACATCATGCTCCAGTTCCTGCTTGGATTTACTCTTGGCAACGTGGTTGGAATGTA
TCTGGCTCAGAACTATGATATACCAAACCTGGCTAAAAAACTTGAAGACATTAAAAAGGA
CCTGGATGCCAAGAAGAAACCCCCTAGTTCATGAGGCCGACTCCAGCCCTGCCTTCTGGA
TTCTACTATTGTCGAGGGCCTTCTTTACTCTGAACCAAAAGCTTTTGTTTTAATTTCCAG
CCTCAGCAGTTTTCTTCATTGTGTTGCCTTAGAGCACAAATGGGGCCACAAGTTAAGAAC
TACCCTTAATTTTCCAACAGCATCACTTCTTCCCTTGCTCCTTCCAGCCACTTGGAAGGC
CCTGAAACTGGAATTATGGTGCTAGATTAGTAAACATGACCTTTAATTAGTAGTCTCTCC
CTTTTTCTTTGGAATTTCTATTACCTTTTTTCAAAAGAAAAATTGATAAATTTTGTATAG
CAGATGAGATATAAATAATGCTGATTTCACATTCTAGCAATTATATAATGGGTATTTAAA
CATTCGGTACTTAATTATGTTATTTCAAAATAGTAGTTAAAATCAAGAAGCCAGTTCCTG
GTGAATTATCCATTGTTGTCAGGAAGCTGCATAGTTGCTATTGTAACCACTATATCAATT
TGCTATTCATTAACCAAGAAACAGTGTTCTGAGAACCCTGAGAACTTACAAATATTTAAA
ATAATGGCCGTTGTCCTCAATAGTATTCCTAGTCTAATATTCATGTTGTTTTTTAATGAT
GTGTTTGATCTGGTTCTTTTCCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47196821|emb|CAF89328.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47196821|emb|CAF89328.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               140-861, gnl|bosTau2|chr4 (56297636-56296879)
               

               
               140-861, gnl|Hg17|chr7 (134816094-134816865)
               

               
               140-861, gnl|Mm7|chr6 (35192362-35193076)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-861, gnl|bosTau2|chr4 (56297636-56296879)
               

               
               140-861, gnl|Hg17|chr7 (134816094-134816865)
               

               
               140-861, gnl|Mm7|chr6 (35192362-35193076)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               fce (0.543183)
               

               
               cly (0.482567)
               

               
               cbe (0.478469)
               

               
               fcc (0.39557)
               

               
               ecc (0.345105)
               

               
               eli (0.303628)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               cly (0.482567)
               

               
               cbe (0.478469)
               

               
               fcc (0.39557)
               

               
               ecc (0.345105)
               

               
               eli (0.303628)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	140-861, gnl\|bosTau2\|chr4 (56297636-56296879)
	140-861, gnl\|Hg17\|chr7 (134816094-134816865)
	140-861, gnl\|Mm7\|chr6 (35192362-35193076)

	fce (0.543183)
	cly (0.482567)
	cbe (0.478469)
	fcc (0.39557)
	ecc (0.345105)
	eli (0.303628)
	bfe (0.299715)
	jej (0.296765)
	sug (0.254582)
	ese (0.253004)
	med (0.232504)
	mgp (0.230681)
	nms (0.213858)
	tes (0.207814)
	fli (0.202881)
	nbm (0.198649)
	eje (0.197668)
	ldo (0.194005)
	cmu (0.186393)
	sto (0.179824)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	nje (0.16592)
	cki (0.165235)
	mga (0.160205)
	tbr (0.154178)
	cag (0.151194)
	lun (0.150489)
	isp (0.150376)
	hyp (0.142837)
	ssp (0.13552)
	nmm (0.132802)
	cov (0.132153)
	kid (0.129735)
	thg (0.126791)
	cbl (0.114797)
	spc (0.113366)