Non-Coding RNA Search

Ss1.1-Pig4-TMW8066O24.3

Sequence:


               
               CCTCTAGTTGTGTTATTTCAGATATGTGATGTCACTTTTCCATACATTGCCTTCACATCA
TGAATGCTTAATTGTGAACAGTGGTTACTTTGTAGAGCTCATATGCAGTTACAGAGGTGA
GTTTTGTTTCAGAGGGTCTTATTTCTTGGTGTAAAGATTTTTTAAATAGTGCTGTGTATA
GTGTACATTTTGTTTTGCACATAGTTTGTTGCCCTGAACGGGTTTTATTTTTACCAAGTC
TTTTATTTTTCTCTTGTAATTACAGTCCAGAGCACAAGTTTCCTTTCTTTTAAATACAAT
GTAATTTGCTCTATCTTACAACACTAAGTCTGCTTGAACTTCCGGGGCATTGAGCTGATT
GCATTGATGGGAGTTAGGGATTGTTCCAGATGCCCTTACAGTTTGATAGAGCAGCTCCTT
CTGCTTGTCTTTAAGCTGCAGCACACAGTCAGTGGGTGCCATTTGTGGTATTTAATGTAC
TTATGTTAGGGTGATGATTGTACCAAATGCTGAGTTGTTTTGTTTCTAGATGTAATTAGT
TCACTTAATGTAATATTCTTCCTTCTCTCAAACTGACTTTAAAAGCAAAGTTTTATCATT
TTCATTGTATTTGTATTTATTACAGAGTGTTTTAGCTTTGATATTCTTTGTATTTTCACT
CAGTTGTTACATGAGCTTTATCAATAACATCTGTATAAATGGTTTTTAAAAATTAACTAT
GTATGTGCCCATGCCGAAGTTGAGCAATAAAATGAATGCTGTTTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTAGTTGTGTTATTTCAGATATGTGATGTCACTTTTCCATACATTGCCTTCACATCA
TGAATGCTTAATTGTGAACAGTGGTTACTTTGTAGAGCTCATATGCAGTTACAGAGGTGA
GTTTTGTTTCAGAGGGTCTTATTTCTTGGTGTAAAGATTTTTTAAATAGTGCTGTGTATA
GTGTACATTTTGTTTTGCACATAGTTTGTTGCCCTGAACGGGTTTTATTTTTACCAAGTC
TTTTATTTTTCTCTTGTAATTACAGTCCAGAGCACAAGTTTCCTTTCTTTTAAATACAAT
GTAATTTGCTCTATCTTACAACACTAAGTCTGCTTGAACTTCCGGGGCATTGAGCTGATT
GCATTGATGGGAGTTAGGGATTGTTCCAGATGCCCTTACAGTTTGATAGAGCAGCTCCTT
CTGCTTGTCTTTAAGCTGCAGCACACAGTCAGTGGGTGCCATTTGTGGTATTTAATGTAC
TTATGTTAGGGTGATGATTGTACCAAATGCTGAGTTGTTTTGTTTCTAGATGTAATTAGT
TCACTTAATGTAATATTCTTCCTTCTCTCAAACTGACTTTAAAAGCAAAGTTTTATCATT
TTCATTGTATTTGTATTTATTACAGAGTGTTTTAGCTTTGATATTCTTTGTATTTTCACT
CAGTTGTTACATGAGCTTTATCAATAACATCTGTATAAATGGTTTTTAAAAATTAACTAT
GTATGTGCCCATGCCGAAGTTGAGCAATAAAATGAATGCTGTTTGCAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-768, gnl|bosTau2|chr19 (42674031-42673271)
               

               
               1-768, gnl|Hg17|chr17 (59969643-59968889)
               

               
               1-768, gnl|Mm7|chr11 (106929806-106929128)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr19 (42674031-42673271)
               

               
               1-768, gnl|Hg17|chr17 (59969643-59968889)
               

               
               1-768, gnl|Mm7|chr11 (106929806-106929128)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-768, gnl\|bosTau2\|chr19 (42674031-42673271)
	1-768, gnl\|Hg17\|chr17 (59969643-59968889)
	1-768, gnl\|Mm7\|chr11 (106929806-106929128)

	vin (0.332557)
	hea (0.204499)
	sto (0.179824)
	rec (0.17307)
	eye (0.170503)
	cki (0.165235)
	eli (0.151814)
	fat (0.147427)
	nmm (0.132802)
	bla (0.124347)
	spc (0.113366)
	eje (0.0988338)