Ss1.1-Pig4-TMW8066P15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCGCGGCGCCATGCAGTTGACCCCGCGCGCGCTGTGCGCCGCCGGCCGGGCCGCCTTT CGGGAGAGCTTTCCCGTGGGCGGTCGCGACGTGGCGCGCTGGTTCCCAGGCCACATGGCC AAGGGGCTGAGGAAGATGCAGAGCAGCCTAAAGCTGGTGGACTGTATCCTCGAGGTCCAC GACGCCCGGATCCCACTTTCGGGCCGAAACCCTCTGTTTCAGGAAACTCTTGGGCTTAAG CCGCACTTGCTAGTCCTCAACAAGATGGACCTGGCGGATCTGAAGGAGCAGCAGAAAATT ATGCAACATTTAGAAAGAGAAGGCCTAAAAAATGTCATTTTTACCAACTGTGTAAAGGAT GAAAATATCAAGCAGATCATCCCGAAGGTCACGGAACTGGTCGGGAGCAGCTGCCGCTAT CACCGAGGAGAGAGCGTGGAGTACTGCATCATGGTCATCGGAGTCCCCAACGTGGGCAAG TCCTCGCTCATCAACGCCCTCCGGAGGCAGCACCTCAGGAAAGGAAAAGCCACCAAGGTG GGCGGCGAGCCTGGGATCACCAGGGCTGTGATGTCCAGAGTTCAGGTGTGCGAGCGGCCG CTGATGTTCCTGCTGGACACCCCCGGGGTGCTGGCTCCTCGGATCCAGAACGTGGAGACG GGCCTGAAGCTGGCCCTGTGTGGAACCGTGCTGGACCACCTGGTGGGGGAGGAGACCCTG GCCGACTACCTCCTCTACACCCTCAACAGGCACCAGCTCCTGGGGTACGTGCAGCACTAC GGCCTGGGCCAGGCCTGCGACGACATCACGAGCGTGCTGAAGCAGGTGGCCGTGCGGCTG AGGAAGACGCAGAAGGTGAAGGTGCTGACCGGCACGGGTGACGTGAACGTCGTCCAGCCC AACTACCCCGCGGCCGCCAGGGACTTCCTGCGGGCCTTCCGCAGCGGCGCGCTGGGCCCC GTGATGCTGGACCGCGACATCCTGCAGGGCGTCCCCTCGGTGGAGCCCTGACCCTGAGGG CGTCACCCCTGCCCTCGGCTCCACGGCTACGGGCTTGTCGCCCAGGAGCCCCCGTCCGCC AGTTCCTCGCTGGTCACTGTGCGCTCGCGTCTCTGCTGCACAGCCCGGCCAACGCCTGGT GACAGAGACCGCGCCTCGGCCCTGGACGTCCCTGCCTGCCCGGCCGGGGGAGGACGCTCA CTCACGTTCAGGGAGAGCTGCTGTTTCTCAGGAGTTGAAACTGTAGCCTGTAATTGTGGA ATTTTAAATTAAAGGCCCGTCTCTGCGGTCGGCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCGCGGCGCCATGCAGTTGACCCCGCGCGCGCTGTGCGCCGCCGGCCGGGCCGCCTTT CGGGAGAGCTTTCCCGTGGGCGGTCGCGACGTGGCGCGCTGGTTCCCAGGCCACATGGCC AAGGGGCTGAGGAAGATGCAGAGCAGCCTAAAGCTGGTGGACTGTATCCTCGAGGTCCAC GACGCCCGGATCCCACTTTCGGGCCGAAACCCTCTGTTTCAGGAAACTCTTGGGCTTAAG CCGCACTTGCTAGTCCTCAACAAGATGGACCTGGCGGATCTGAAGGAGCAGCAGAAAATT ATGCAACATTTAGAAAGAGAAGGCCTAAAAAATGTCATTTTTACCAACTGTGTAAAGGAT GAAAATATCAAGCAGATCATCCCGAAGGTCACGGAACTGGTCGGGAGCAGCTGCCGCTAT CACCGAGGAGAGAGCGTGGAGTACTGCATCATGGTCATCGGAGTCCCCAACGTGGGCAAG TCCTCGCTCATCAACGCCCTCCGGAGGCAGCACCTCAGGAAAGGAAAAGCCACCAAGGTG GGCGGCGAGCCTGGGATCACCAGGGCTGTGATGTCCAGAGTTCAGGTGTGCGAGCGGCCG CTGATGTTCCTGCTGGACACCCCCGGGGTGCTGGCTCCTCGGATCCAGAACGTGGAGACG GGCCTGAAGCTGGCCCTGTGTGGAACCGTGCTGGACCACCTGGTGGGGGAGGAGACCCTG GCCGACTACCTCCTCTACACCCTCAACAGGCACCAGCTCCTGGGGTACGTGCAGCACTAC GGCCTGGGCCAGGCCTGCGACGACATCACGAGCGTGCTGAAGCAGGTGGCCGTGCGGCTG AGGAAGACGCAGAAGGTGAAGGTGCTGACCGGCACGGGTGACGTGAACGTCGTCCAGCCC AACTACCCCGCGGCCGCCAGGGACTTCCTGCGGGCCTTCCGCAGCGGCGCGCTGGGCCCC GTGATGCTGGACCGCGACATCCTGCAGGGCGTCCCCTCGGTGGAGCCCTGACCCTGAGGG CGTCACCCCTGCCCTCGGCTCCACGGCTACGGGCTTGTCGCCCAGGAGCCCCCGTCCGCC AGTTCCTCGCTGGTCACTGTGCGCTCGCGTCTCTGCTGCACAGCCCGGCCAACGCCTGGT GACAGAGACCGCGCCTCGGCCCTGGACGTCCCTGCCTGCCCGGCCGGGGGAGGACGCTCA CTCACGTTCAGGGAGAGCTGCTGTTTCTCAGGAGTTGAAACTGTAGCCTGTAATTGTGGA ATTTTAAATTAAAGGCCCGTCTCTGCGGTCGGCCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 4-125, gnl|bosTau2|chr26 (35015293-35015172) | |
| 4-125, gnl|Hg17|chr10 (135096602-135096718) | |
| 4-125, gnl|Mm7|chr7 (136551451-136551561) | |
| 190-294, gnl|bosTau2|chr26 (35011420-35011316) | |
| 190-294, gnl|echTel1|scaffold_231133 (6342-6469) | |
| 190-294, gnl|fr1|chrUn (16552999-16553125) | |
| 190-294, gnl|galGal2|chr6 (8732970-8732843) | |
| 190-294, gnl|hg17|chr10 (135098534-135098691) | |
| 190-294, gnl|Hg17|chr10 (135098548-135098652) | |
| 190-294, gnl|loxAfr1|scaffold_174469 (1015-1166) | |
| 190-294, gnl|mm7|chr7 (136553966-136554125) | |
| 190-294, gnl|Mm7|chr7 (136553983-136554087) | |
| 190-294, gnl|monDom2|scaffold_41 (9571725-9571581) | |
| 190-294, gnl|panTro1|chr8 (137936435-137936592) | |
| 190-294, gnl|rheMac2|chr9 (133032341-133032496) | |
| 190-294, gnl|rn3|chr1 (200090332-200090491) | |
| 190-294, gnl|tetNig1|chr17 (4628450-4628299) | |
| 583-683, gnl|bosTau2|chr26 (35007330-35007230) | |
| 583-683, gnl|canFam2|chrUn (73706792-73706664) | |
| 583-683, gnl|dasNov1|scaffold_270017 (1006-874) | |
| 583-683, gnl|echTel1|scaffold_187780 (3519-3427) | |
| 583-683, gnl|fr1|chrUn (16553937-16554059) | |
| 583-683, gnl|hg17|chr10 (135104509-135104647) | |
| 583-683, gnl|Hg17|chr10 (135104529-135104631) | |
| 583-683, gnl|mm7|chr7 (136560577-136560700) | |
| 583-683, gnl|Mm7|chr7 (136560595-136560695) | |
| 583-683, gnl|monDom2|scaffold_41 (9560751-9560618) | |
| 583-683, gnl|oryCun1|scaffold_190980 (7522-7413) | |
| 583-683, gnl|panTro1|chr8 (137942448-137942580) | |
| 583-683, gnl|rheMac2|chr9 (133037420-133037552) | |
| 583-683, gnl|rn3|chr1 (200096951-200097074) | |
| 583-683, gnl|tetNig1|chr17 (4627551-4627445) | |
| 764-881, gnl|bosTau2|chr26 (35004075-35003958) | |
| 764-881, gnl|canFam2|chrUn (73703054-73702926) | |
| 764-881, gnl|echTel1|scaffold_230667 (543-671) | |
| 764-881, gnl|fr1|chrUn (16554324-16554448) | |
| 764-881, gnl|hg17|chr10 (135121863-135122009) | |
| 764-881, gnl|Hg17|chr10 (135121864-135121981) | |
| 764-881, gnl|mm7|chr7 (136563533-136563679) | |
| 764-881, gnl|Mm7|chr7 (136563534-136563651) | |
| 764-881, gnl|monDom2|scaffold_41 (9558551-9558406) | |
| 764-881, gnl|oryCun1|scaffold_190980 (4240-4112) | |
| 764-881, gnl|panTro1|chr8 (137959875-137960021) | |
| 764-881, gnl|rheMac2|chr9 (133052278-133052424) | |
| 764-881, gnl|rn3|chr1 (200099827-200099972) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-125, gnl|bosTau2|chr26 (35015293-35015172) | |
| 4-125, gnl|Hg17|chr10 (135096602-135096718) | |
| 4-125, gnl|Mm7|chr7 (136551451-136551561) | |
| 190-294, gnl|bosTau2|chr26 (35011420-35011316) | |
| 190-294, gnl|echTel1|scaffold_231133 (6342-6469) | |
| 190-294, gnl|fr1|chrUn (16552999-16553125) | |
| 190-294, gnl|galGal2|chr6 (8732970-8732843) | |
| 190-294, gnl|hg17|chr10 (135098534-135098691) | |
| 190-294, gnl|Hg17|chr10 (135098548-135098652) | |
| 190-294, gnl|loxAfr1|scaffold_174469 (1015-1166) | |
| 190-294, gnl|mm7|chr7 (136553966-136554125) | |
| 190-294, gnl|Mm7|chr7 (136553983-136554087) | |
| 190-294, gnl|monDom2|scaffold_41 (9571725-9571581) | |
| 190-294, gnl|panTro1|chr8 (137936435-137936592) | |
| 190-294, gnl|rheMac2|chr9 (133032341-133032496) | |
| 190-294, gnl|rn3|chr1 (200090332-200090491) | |
| 190-294, gnl|tetNig1|chr17 (4628450-4628299) | |
| 583-683, gnl|bosTau2|chr26 (35007330-35007230) | |
| 583-683, gnl|canFam2|chrUn (73706792-73706664) | |
| 583-683, gnl|dasNov1|scaffold_270017 (1006-874) | |
| 583-683, gnl|echTel1|scaffold_187780 (3519-3427) | |
| 583-683, gnl|fr1|chrUn (16553937-16554059) | |
| 583-683, gnl|hg17|chr10 (135104509-135104647) | |
| 583-683, gnl|Hg17|chr10 (135104529-135104631) | |
| 583-683, gnl|mm7|chr7 (136560577-136560700) | |
| 583-683, gnl|Mm7|chr7 (136560595-136560695) | |
| 583-683, gnl|monDom2|scaffold_41 (9560751-9560618) | |
| 583-683, gnl|oryCun1|scaffold_190980 (7522-7413) | |
| 583-683, gnl|panTro1|chr8 (137942448-137942580) | |
| 583-683, gnl|rheMac2|chr9 (133037420-133037552) | |
| 583-683, gnl|rn3|chr1 (200096951-200097074) | |
| 583-683, gnl|tetNig1|chr17 (4627551-4627445) | |
| 764-881, gnl|bosTau2|chr26 (35004075-35003958) | |
| 764-881, gnl|canFam2|chrUn (73703054-73702926) | |
| 764-881, gnl|echTel1|scaffold_230667 (543-671) | |
| 764-881, gnl|fr1|chrUn (16554324-16554448) | |
| 764-881, gnl|hg17|chr10 (135121863-135122009) | |
| 764-881, gnl|Hg17|chr10 (135121864-135121981) | |
| 764-881, gnl|mm7|chr7 (136563533-136563679) | |
| 764-881, gnl|Mm7|chr7 (136563534-136563651) | |
| 764-881, gnl|monDom2|scaffold_41 (9558551-9558406) | |
| 764-881, gnl|oryCun1|scaffold_190980 (4240-4112) | |
| 764-881, gnl|panTro1|chr8 (137959875-137960021) | |
| 764-881, gnl|rheMac2|chr9 (133052278-133052424) | |
| 764-881, gnl|rn3|chr1 (200099827-200099972) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| col (0.195008) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| ecc (0.115035) |