Non-Coding RNA Search

Ss1.1-Pig4-TMW8066P19.3.5

Sequence:


               
               CAAAAGTTGAGCTGGAGACTTACAAGCAGACACGGCAAGGTCTGGACGAAATGTACAGTG
ATGTGTGGAAGCAGCTAAAGGAGGAGAAGAAGGCGCGCTTGGAACTAGAAAAAGAACTGG
AGTTACAAATTGGAATGAAAACTGAAATGGAAATTGCAATGAAACTACTAGAAAAGGACA
CCCACGAGAAGCAGGACACACTAGTTGCCCTGCGCCAGCAGCTGGAAGACGTCAAAGCGA
TTAATTTACAGATGTTTCACAAAGTTCAGAATGCAGAGAGCAGTTTACAACAGAAGAATG
AAGCCATCACATCTTTTGAAGAAAAAAATAATCAAGTTATGTCCAGCATGAAACAGATGG
AAGAAAGGTTACACCACGCAGAGCGGGCAAGGCAGGGCGCCGAGGAGCGGAGCCAGAAGC
TGCAGCAGGAGCTGGGCGGGCGGACCAGCGCCCTGCAGCAGCAGCTCGCCCAGCTACACC
AGCAGTGCTCAAGTCTAGAGAAAGAGTTGAAATCAGAAAAAGAGCAAAGACAAGCTCTTC
AGCGAGAATTACTACATGAGAAAGACACTTCCTCTCTCCTCCAAGCCGAGCTACAACAAG
TAGAAGGATTAAAAAAGGAGCTGCGGGAGCTCCAGGACGAGAAGGCAGAGTTACAGAAGG
TTTGTGACGAGCAGGAACAAGCCCTCCAGGAAATGGGTCTACACCTCAGCCAGTCAAAGC
TGAAAATGGAGGACATCAAGGAAGTAAATAAGGCACTGAAGGGCCACACCTGGTTGAAAG
ATGATGAAGCAACACACTGTAAGCAGTGTGAAAAGGAGTTCTCCATTTCCCGGAGAAAGC
ACCACTGCCGAAACTGTGGCCACATCTTCTGCAACACATGTTCCAGTAATGAGCTGGCCC
TGCCCTCCTATCCCAAGCCAGTGCGTGTGTGTGACAGCTGCCACACCCTGCTCCTTCAAC
GTTGCTCCTCCTCCACAGGCTCCTAAGGTGGGGGCATCAGCAGGGCCTGCTTTCTGAACC
AGTTGCAACGTTTTCAGCGGCGTAGGCAGCCCCACAACAGTGCCAAACTCTTTGGGTCTC
CAGGTGGCTAGGGGCTTGGGAGGTTGGTTTCCCAAGAGAATTAAAGGATGAGCTCCTCAC
CTGGGCTGCCGACACTTGGGAACAAAGCACACGGGACTGGAAGCTGCACACCTCCCTTTC
CAAATTGTATGGAATCAGTTCCTCTGGATTGAAACTTTTCTCACTCGCCATCTCTGGCTT
TGGTTCAAATAGAACTTCATGATTTTGCTGTTGTCACCTTTCACTTTCCAATTAACCTGT
TTTTGCAGCAGTCCCACTAGTGAAGTAATCATAATCAGTTCCTTCCTCTCCCCCATCCCT
AACCCACCCCCCCAGTGTGTCCTTTCAAAAGTCAAGAAATCTGCCATTTCCACACTCTTG
TGAATATCCATCATTAGCCCTGCAATAAATTCATTTATTTTTCACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAGTTGAGCTGGAGACTTACAAGCAGACACGGCAAGGTCTGGACGAAATGTACAGTG
ATGTGTGGAAGCAGCTAAAGGAGGAGAAGAAGGCGCGCTTGGAACTAGAAAAAGAACTGG
AGTTACAAATTGGAATGAAAACTGAAATGGAAATTGCAATGAAACTACTAGAAAAGGACA
CCCACGAGAAGCAGGACACACTAGTTGCCCTGCGCCAGCAGCTGGAAGACGTCAAAGCGA
TTAATTTACAGATGTTTCACAAAGTTCAGAATGCAGAGAGCAGTTTACAACAGAAGAATG
AAGCCATCACATCTTTTGAAGAAAAAAATAATCAAGTTATGTCCAGCATGAAACAGATGG
AAGAAAGGTTACACCACGCAGAGCGGGCAAGGCAGGGCGCCGAGGAGCGGAGCCAGAAGC
TGCAGCAGGAGCTGGGCGGGCGGACCAGCGCCCTGCAGCAGCAGCTCGCCCAGCTACACC
AGCAGTGCTCAAGTCTAGAGAAAGAGTTGAAATCAGAAAAAGAGCAAAGACAAGCTCTTC
AGCGAGAATTACTACATGAGAAAGACACTTCCTCTCTCCTCCAAGCCGAGCTACAACAAG
TAGAAGGATTAAAAAAGGAGCTGCGGGAGCTCCAGGACGAGAAGGCAGAGTTACAGAAGG
TTTGTGACGAGCAGGAACAAGCCCTCCAGGAAATGGGTCTACACCTCAGCCAGTCAAAGC
TGAAAATGGAGGACATCAAGGAAGTAAATAAGGCACTGAAGGGCCACACCTGGTTGAAAG
ATGATGAAGCAACACACTGTAAGCAGTGTGAAAAGGAGTTCTCCATTTCCCGGAGAAAGC
ACCACTGCCGAAACTGTGGCCACATCTTCTGCAACACATGTTCCAGTAATGAGCTGGCCC
TGCCCTCCTATCCCAAGCCAGTGCGTGTGTGTGACAGCTGCCACACCCTGCTCCTTCAAC
GTTGCTCCTCCTCCACAGGCTCCTAAGGTGGGGGCATCAGCAGGGCCTGCTTTCTGAACC
AGTTGCAACGTTTTCAGCGGCGTAGGCAGCCCCACAACAGTGCCAAACTCTTTGGGTCTC
CAGGTGGCTAGGGGCTTGGGAGGTTGGTTTCCCAAGAGAATTAAAGGATGAGCTCCTCAC
CTGGGCTGCCGACACTTGGGAACAAAGCACACGGGACTGGAAGCTGCACACCTCCCTTTC
CAAATTGTATGGAATCAGTTCCTCTGGATTGAAACTTTTCTCACTCGCCATCTCTGGCTT
TGGTTCAAATAGAACTTCATGATTTTGCTGTTGTCACCTTTCACTTTCCAATTAACCTGT
TTTTGCAGCAGTCCCACTAGTGAAGTAATCATAATCAGTTCCTTCCTCTCCCCCATCCCT
AACCCACCCCCCCAGTGTGTCCTTTCAAAAGTCAAGAAATCTGCCATTTCCACACTCTTG
TGAATATCCATCATTAGCCCTGCAATAAATTCATTTATTTTTCACTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H6I3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H6I3_HUMAN

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               57-530, gnl|bosTau2|chr19 (6527470-6527940)
               

               
               57-530, gnl|Hg17|chr5 (105779999-105779539)
               

               
               57-530, gnl|Mm7|chr5 (88575690-88584566)
               


               
               838-1112, gnl|bosTau2|chr7 (278326-278603)
               

               
               838-1112, gnl|Hg17|chr5 (178968981-178969208)
               

               
               838-1112, gnl|Mm7|chr11 (50346717-50346428)
               


               
               1124-1488, gnl|bosTau2|chr7 (278591-278937)
               

               
               1124-1488, gnl|Hg17|chr5 (178969192-178969623)
               

               
               1124-1488, gnl|Mm7|chr11 (50346440-50346055)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-530, gnl|bosTau2|chr19 (6527470-6527940)
               

               
               57-530, gnl|Hg17|chr5 (105779999-105779539)
               

               
               57-530, gnl|Mm7|chr5 (88575690-88584566)
               


               
               838-1112, gnl|bosTau2|chr7 (278326-278603)
               

               
               838-1112, gnl|Hg17|chr5 (178968981-178969208)
               

               
               838-1112, gnl|Mm7|chr11 (50346717-50346428)
               


               
               1124-1488, gnl|bosTau2|chr7 (278591-278937)
               

               
               1124-1488, gnl|Hg17|chr5 (178969192-178969623)
               

               
               1124-1488, gnl|Mm7|chr11 (50346440-50346055)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ton (0.1755)
               

               
               pty (0.142714)
               

               
               cbr (0.127975)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               cbr (0.127975)
               

               
               jca (0.11396)

	57-530, gnl\|bosTau2\|chr19 (6527470-6527940)
	57-530, gnl\|Hg17\|chr5 (105779999-105779539)
	57-530, gnl\|Mm7\|chr5 (88575690-88584566)

	838-1112, gnl\|bosTau2\|chr7 (278326-278603)
	838-1112, gnl\|Hg17\|chr5 (178968981-178969208)
	838-1112, gnl\|Mm7\|chr11 (50346717-50346428)

	1124-1488, gnl\|bosTau2\|chr7 (278591-278937)
	1124-1488, gnl\|Hg17\|chr5 (178969192-178969623)
	1124-1488, gnl\|Mm7\|chr11 (50346440-50346055)