Non-Coding RNA Search

Ss1.1-Pig4-TMW8066P20.3.5

Sequence:


               
               CAAGAAGTTCCAGATTAATGGAGAATTATCATGTTACAGAATTTCACTCATGTTAAACTG
ATGATAGGAAAACTTCCATCTTCATTGATTGCCTTATGAGATAGCCAAATACTTCTGTAA
GATATACCTCTTCCTCATAAGTTAAATATTTTGTAAAGTTTCTCAATTTCAGATATATAA
ATTTCTTTCAGTTTTTATGATGAGCAAATATAAGTTAATGCCAAAAAGTTATGTAAAAGT
TATTTTTAAAAATATAGGCTTGGGGGAGAGAAGCCAATTTTGAATGGCTCATTGAAAATG
GTCTTAGATACTTAATCCCTTTTCACCTTATTTAAAAACAAACAAAAAAAGCAACAGAGT
TATTCTGTCACCTGAAGTTGTCAAGTAGTATTTTCCAACAGCTGAAGTTAAGTAGTTTTT
TAAAAAATTTAATGATGGATAATCAAAGATTCACATTTATTTTGCTCGATTAAAAGTATG
CCAGCTTTTTTTTATCGTATGCTATCTAGAATTACAAGTAGAATTGTTTCTACAATTTTT
CTTGTTTTAATAATTGGAGAAAATGGGATAAAATACAACAAATGGCTATCCCACTTGTAT
ATTTTTTTAAAGACTCTTATCCTGTTATCCTCACATAAAACCAATTATGATAATTGTATA
TTTGGGGAGATAAACTGTATACTGAGCCTTAAAACCCAGTGTGACTGTAGAAGATGTAAT
ATGGATGTGATTTAAACTCAGTGACCAGCTTGGCTGATGTTACTGAACCAAAAGGGGTGA
AGGAAAGGTGAAAAGTAGTATTTTGTATATTTTTATATTAAATATGAACTAAGATGTTTT
ACCATGAAGAGATTGCACCTTTCCTTGAGAACAGTATTGCTATGTTTCACTTTTATGCTA
ATTATAAATACAAATCTGATAAAGGCATTTAGAATTAAACTTTAAAAAACAATTTAGATC
AGTTGAAAACCAATTCTTACCAAGCCACTAATGTATAACCTTTAGTTTAAATTCATCGTT
TTAGTTGACGTTTGGGTCAGTCCTGTTGAACAGTTTGATCTTTTCTGTATTCTTATGAAT
GATGGTCATTTTTCCTATTTTCCTGTAATTGATTTTAGATAATTGTTTTCAAAAAGAAAT
ATGTGGTATTTTCACTTTCTTAACATTTTGAGTAACACACATGAAAAGGCCCACTTGTCT
CCCTAACCCTTCACCCTGGCTGGTGGTAGAGAGTTTGGAGTTTTCCTTACAAGCTCAGAT
CATAGTAGCCCTGAATTTAAGCGTATCTTTTCAGGTAACTTCAAAGCCTGTTTGCTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAAGTTCCAGATTAATGGAGAATTATCATGTTACAGAATTTCACTCATGTTAAACTG
ATGATAGGAAAACTTCCATCTTCATTGATTGCCTTATGAGATAGCCAAATACTTCTGTAA
GATATACCTCTTCCTCATAAGTTAAATATTTTGTAAAGTTTCTCAATTTCAGATATATAA
ATTTCTTTCAGTTTTTATGATGAGCAAATATAAGTTAATGCCAAAAAGTTATGTAAAAGT
TATTTTTAAAAATATAGGCTTGGGGGAGAGAAGCCAATTTTGAATGGCTCATTGAAAATG
GTCTTAGATACTTAATCCCTTTTCACCTTATTTAAAAACAAACAAAAAAAGCAACAGAGT
TATTCTGTCACCTGAAGTTGTCAAGTAGTATTTTCCAACAGCTGAAGTTAAGTAGTTTTT
TAAAAAATTTAATGATGGATAATCAAAGATTCACATTTATTTTGCTCGATTAAAAGTATG
CCAGCTTTTTTTTATCGTATGCTATCTAGAATTACAAGTAGAATTGTTTCTACAATTTTT
CTTGTTTTAATAATTGGAGAAAATGGGATAAAATACAACAAATGGCTATCCCACTTGTAT
ATTTTTTTAAAGACTCTTATCCTGTTATCCTCACATAAAACCAATTATGATAATTGTATA
TTTGGGGAGATAAACTGTATACTGAGCCTTAAAACCCAGTGTGACTGTAGAAGATGTAAT
ATGGATGTGATTTAAACTCAGTGACCAGCTTGGCTGATGTTACTGAACCAAAAGGGGTGA
AGGAAAGGTGAAAAGTAGTATTTTGTATATTTTTATATTAAATATGAACTAAGATGTTTT
ACCATGAAGAGATTGCACCTTTCCTTGAGAACAGTATTGCTATGTTTCACTTTTATGCTA
ATTATAAATACAAATCTGATAAAGGCATTTAGAATTAAACTTTAAAAAACAATTTAGATC
AGTTGAAAACCAATTCTTACCAAGCCACTAATGTATAACCTTTAGTTTAAATTCATCGTT
TTAGTTGACGTTTGGGTCAGTCCTGTTGAACAGTTTGATCTTTTCTGTATTCTTATGAAT
GATGGTCATTTTTCCTATTTTCCTGTAATTGATTTTAGATAATTGTTTTCAAAAAGAAAT
ATGTGGTATTTTCACTTTCTTAACATTTTGAGTAACACACATGAAAAGGCCCACTTGTCT
CCCTAACCCTTCACCCTGGCTGGTGGTAGAGAGTTTGGAGTTTTCCTTACAAGCTCAGAT
CATAGTAGCCCTGAATTTAAGCGTATCTTTTCAGGTAACTTCAAAGCCTGTTTGCTGAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               776-884, - strand, RNAz p=0.615742

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               776-884, - strand, RNAz p=0.615742

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1319, gnl|bosTau2|chr17 (26735343-26736648)
               

               
               1-1319, gnl|Hg17|chr12 (122767475-122769161)
               

               
               1-1319, gnl|Mm7|chr5 (123956039-123957229)
               


               
               279-601, gnl|bosTau2|chr11 (87129024-87129360)
               

               
               279-601, gnl|Hg17|chr12 (122767753-122768420)
               

               
               279-601, gnl|Mm7|chr5 (123956319-123956633)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1319, gnl|bosTau2|chr17 (26735343-26736648)
               

               
               1-1319, gnl|Hg17|chr12 (122767475-122769161)
               

               
               1-1319, gnl|Mm7|chr5 (123956039-123957229)
               


               
               279-601, gnl|bosTau2|chr11 (87129024-87129360)
               

               
               279-601, gnl|Hg17|chr12 (122767753-122768420)
               

               
               279-601, gnl|Mm7|chr5 (123956319-123956633)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               liv (0.292569)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)

	1-1319, gnl\|bosTau2\|chr17 (26735343-26736648)
	1-1319, gnl\|Hg17\|chr12 (122767475-122769161)
	1-1319, gnl\|Mm7\|chr5 (123956039-123957229)

	279-601, gnl\|bosTau2\|chr11 (87129024-87129360)
	279-601, gnl\|Hg17\|chr12 (122767753-122768420)
	279-601, gnl\|Mm7\|chr5 (123956319-123956633)

	liv (0.292569)
	mga (0.160205)
	spl (0.143184)
	pty (0.142714)
	pla (0.133672)
	nmm (0.132802)
	sug (0.127291)
	thg (0.126791)
	ebs (0.118301)