Ss1.1-Pig4-TMW8067A06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTCCGGGCGGGCGCGGCGGCCGCGGCGGCGGCGGCGGCAGCAGCAGCAGTAGCCTCCG TGGCTGTTCCTCCCCGCGGCCCGGAGCCCGCGGCTCTCCTGGCTCCCGCCGAGCATCTCC AGGGGCGGTTCTGGCTAGCGCCAGCCCTCGGGCCGGGCCGGATGACCAGGCGCCCATAGC CGCGCGCCGCCCTCTCCCGGCCCGGCGCACAGCCGCCCGCGCGCGAGTCGCCCCGGGACC CGGCACAGGTTGAAGAAATATGGATACCAACTCCACACTGGTCATCAGCATTGTTATCAT CGGCTTTTTCACCTTTCAGCTTCTTTTCCACTTTGTAAGTTGTTGGTTTTCAGCAAAAGT TTCTCCAGGTTTTAATAATCTCAACCTCAAAAAGAAGATTGAATGGAGCTCAAGGGTCGT ATCCACATGTCATTCTTTGGTGGTTGGTGTGGTTGGCTTGTACATTTTCTGGTTTGATGA GGCTACCATTGCTGATCCACTTTGGGGTGATCCATCTTTTGTGAAGGTGAATATTGCTGT TTCTTCAAGCTACCTCATTTCTGATTTGTTTATTCTCATTTTGTATTGGAAAGTGATTGG TGACAAGTATTATATAATTCATCATTGTACAGCGCTGTATGCCTACTACTTCATACTGAG TGAAGGAGTGCTGGCCTACATTGGGAATTTTCGCCTGCTTGCAGAACTTTCTACCCCTTT TGTGAATCAGCGGTGGTTCTTCGAAGCTCTGAGCTACCCCAGGGTTTCCAAGGCCTACGT CATCAACGGGGTCCTCATGACCGCCGTGTTCTTTGTCATGCGGATCGCCTCCATCCCGCC CCTGTACGCCTACATCTACTCCGTGCTGGGGACGGAAGCCTACAGGAGGCTTGGGGCTTT AATCCAGTGCTCCTGGATCTCGTCCTGTGTCGTTCTGGATGTGATGAATGTCATGTGGAT GGTCAAGATTTCAAAGGGGTGCATCAAAGTCATCTCCCTCTTCAGACAAGAGAAAGCCAG AAGGAGTCTGCAGAACGGAAAGCTTGACTGAAAGGGGCTGCGAAACCCACCTTCGCTCCT GCCCACGTCGTTTCTATCGATAGGATGAATTCTTGGCGTGTTCTTGTGCTTCTGTATGAA TTATACCTGTTATCCATGTGTGTCAGTGTCTTTTTTGGTTTTTAATCTTTAGAAAAGAGA AACTAAAGTTTAATTTTTATCCCGAGATTGACTTCCGCATTTTCTTCTGCATTAGAAGCA TGGATAACAATCTTAAAAGTTTAAATAAAAATTTACGAATAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTCCGGGCGGGCGCGGCGGCCGCGGCGGCGGCGGCGGCAGCAGCAGCAGTAGCCTCCG TGGCTGTTCCTCCCCGCGGCCCGGAGCCCGCGGCTCTCCTGGCTCCCGCCGAGCATCTCC AGGGGCGGTTCTGGCTAGCGCCAGCCCTCGGGCCGGGCCGGATGACCAGGCGCCCATAGC CGCGCGCCGCCCTCTCCCGGCCCGGCGCACAGCCGCCCGCGCGCGAGTCGCCCCGGGACC CGGCACAGGTTGAAGAAATATGGATACCAACTCCACACTGGTCATCAGCATTGTTATCAT CGGCTTTTTCACCTTTCAGCTTCTTTTCCACTTTGTAAGTTGTTGGTTTTCAGCAAAAGT TTCTCCAGGTTTTAATAATCTCAACCTCAAAAAGAAGATTGAATGGAGCTCAAGGGTCGT ATCCACATGTCATTCTTTGGTGGTTGGTGTGGTTGGCTTGTACATTTTCTGGTTTGATGA GGCTACCATTGCTGATCCACTTTGGGGTGATCCATCTTTTGTGAAGGTGAATATTGCTGT TTCTTCAAGCTACCTCATTTCTGATTTGTTTATTCTCATTTTGTATTGGAAAGTGATTGG TGACAAGTATTATATAATTCATCATTGTACAGCGCTGTATGCCTACTACTTCATACTGAG TGAAGGAGTGCTGGCCTACATTGGGAATTTTCGCCTGCTTGCAGAACTTTCTACCCCTTT TGTGAATCAGCGGTGGTTCTTCGAAGCTCTGAGCTACCCCAGGGTTTCCAAGGCCTACGT CATCAACGGGGTCCTCATGACCGCCGTGTTCTTTGTCATGCGGATCGCCTCCATCCCGCC CCTGTACGCCTACATCTACTCCGTGCTGGGGACGGAAGCCTACAGGAGGCTTGGGGCTTT AATCCAGTGCTCCTGGATCTCGTCCTGTGTCGTTCTGGATGTGATGAATGTCATGTGGAT GGTCAAGATTTCAAAGGGGTGCATCAAAGTCATCTCCCTCTTCAGACAAGAGAAAGCCAG AAGGAGTCTGCAGAACGGAAAGCTTGACTGAAAGGGGCTGCGAAACCCACCTTCGCTCCT GCCCACGTCGTTTCTATCGATAGGATGAATTCTTGGCGTGTTCTTGTGCTTCTGTATGAA TTATACCTGTTATCCATGTGTGTCAGTGTCTTTTTTGGTTTTTAATCTTTAGAAAAGAGA AACTAAAGTTTAATTTTTATCCCGAGATTGACTTCCGCATTTTCTTCTGCATTAGAAGCA TGGATAACAATCTTAAAAGTTTAAATAAAAATTTACGAATAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 32-250, gnl|bosTau2|chr3 (38552750-38552964) | |
| 32-250, gnl|Hg17|chr1 (95294969-95295196) | |
| 32-250, gnl|Mm7|chr3 (121034466-121034263) | |
| 553-663, gnl|bosTau2|chr3 (37317282-37317391) | |
| 553-663, gnl|canFam2|chr6 (57227344-57227166) | |
| 553-663, gnl|danRer3|chr13 (12302028-12302201) | |
| 553-663, gnl|echTel1|scaffold_308526 (10311-10133) | |
| 553-663, gnl|fr1|chrUn (203803699-203803517) | |
| 553-663, gnl|hg17|chr1 (95328855-95329033) | |
| 553-663, gnl|Hg17|chr1 (95328891-95329000) | |
| 553-663, gnl|loxAfr1|scaffold_7318 (16840-17016) | |
| 553-663, gnl|mm7|chr3 (121000015-120999804) | |
| 553-663, gnl|Mm7|chr3 (120999980-120999871) | |
| 553-663, gnl|monDom2|scaffold_0 (25404888-25404701) | |
| 553-663, gnl|panTro1|chr1 (94321331-94321509) | |
| 553-663, gnl|rheMac2|chr1 (98182986-98183164) | |
| 553-663, gnl|rn3|chr2 (217780198-217780024) | |
| 553-663, gnl|tetNig1|chrUn_random (7586069-7586224) | |
| 1071-1301, gnl|bosTau2|chr3 (37349853-37350079) | |
| 1071-1301, gnl|Hg17|chr1 (95369468-95370005) | |
| 1071-1301, gnl|Mm7|chr3 (120978678-120978468) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-250, gnl|bosTau2|chr3 (38552750-38552964) | |
| 32-250, gnl|Hg17|chr1 (95294969-95295196) | |
| 32-250, gnl|Mm7|chr3 (121034466-121034263) | |
| 553-663, gnl|bosTau2|chr3 (37317282-37317391) | |
| 553-663, gnl|canFam2|chr6 (57227344-57227166) | |
| 553-663, gnl|danRer3|chr13 (12302028-12302201) | |
| 553-663, gnl|echTel1|scaffold_308526 (10311-10133) | |
| 553-663, gnl|fr1|chrUn (203803699-203803517) | |
| 553-663, gnl|hg17|chr1 (95328855-95329033) | |
| 553-663, gnl|Hg17|chr1 (95328891-95329000) | |
| 553-663, gnl|loxAfr1|scaffold_7318 (16840-17016) | |
| 553-663, gnl|mm7|chr3 (121000015-120999804) | |
| 553-663, gnl|Mm7|chr3 (120999980-120999871) | |
| 553-663, gnl|monDom2|scaffold_0 (25404888-25404701) | |
| 553-663, gnl|panTro1|chr1 (94321331-94321509) | |
| 553-663, gnl|rheMac2|chr1 (98182986-98183164) | |
| 553-663, gnl|rn3|chr2 (217780198-217780024) | |
| 553-663, gnl|tetNig1|chrUn_random (7586069-7586224) | |
| 1071-1301, gnl|bosTau2|chr3 (37349853-37350079) | |
| 1071-1301, gnl|Hg17|chr1 (95369468-95370005) | |
| 1071-1301, gnl|Mm7|chr3 (120978678-120978468) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nbm (0.297974) | |
| jej (0.296765) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.297974) | |
| jej (0.296765) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) |