Ss1.1-Pig4-TMW8067A15.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGTGTGTACACGCACAGCCCCGGCTGCCAGGCCCCGGGCAAGAGCTGACCCACTGTGC CCTGGCCCGAGCCGCCGGCCTGCTCCTCAGCGTCACTGCCGACCACAATCTGCTGCTCTA TGAGGCCCGCTCCCTGCAGCTGCAGAAACAGTTTGCCGGCTACAGTGAGGAGGTGCTGGA CGTCCGGTTCCTCGGGCCCGAGAACTCCCACGTAGTTGTGGCCTCGAACAGCCCCTGCCT AAAAGTGTTTGAGCTGCAGACCTCAGCCTGCCAGATCCTCCACGGCCACACAGACATCGT CCTGGCCCTAGACGTGTTCCGGAAGGGGTGGCTCTTCGCCAGCTGTGCCAAGGATCAGAG CATCCGCATCTGGAGGATAAACAAGGCTGGATTGGTGGCCTGTGTGGCTCAGGGCTCTGG GCACACACACAGCGTGGGCACCATTTGCTGCTCAAGGCTGAAGGAGAGCTTCCTGGTGAC GGGCAGCCAGGACTGCACTGTGAAGCTCTGGCCCCTCCCGGAAGCCCTGCCATCCAGGAG CACTGCCCCCGACAGCGGCCCTGTCCTCCTGCAAGCCCAGGCCACACAGCGCTGCCACGA CAAGGACATCAACAGTGTGGCTATTGCCCCCAACGACAAGCTGCTGGCCACAGGGTCACA GGACCGCACGGCCAAACTCTGGGCTCTGCCCCAGTGCCAGTTGCTGGGCATCTTCTCGGG CCACCGGCGTGGCCTCTGGTGTGTCCAGTTCTCGCCCATGGACCAGGTGCTGGCCACGGC CTCGGCAGACGGCACCGTCAAGCTCTGGGCCCTGCAGGACTTCAGCTGCCTCAAGACGTT CGAGGGGCACGACGCGTCTGTGCTCAGGGTGGCCTTTGTGAGCCGCGGCACGCAGCTGCT GTCCAGCGGCTCCGACGGGCTCGTGAAGCTCTGGACCATCAAGAGCAACGAGTGTGTGAG GACGCTGGACGCCCACGAGGACAAGGTCTGGGGGCTGCACTGCAGTCGGCTGGACGACCG CGCCCTCACCGCTGCCAGCGACTCCCGCGTCATCCTCTGGAAGGATGTGACCGAGGAGGA ACAGGCCGAAGAGGAGGCCAGGAGAGAGGAGGAGGTGGTCAGGCAGCAAGAACTGGACAA CCTGCTCCATGAGAAGCGGTACCTGCGGGCGCTGGGCCTGGCCATCTCCCTGGACCGGCC CCACACCGTGCTGACCGTCATCCAGGCCATCCGAAGGGACCCTGAGTCTTGCGAGAAGCT GGAAGCCACAGTGCTCCAACTGCGGCGAGACCAGAAAGAGGCCTTGCTGCGCTTCTGTGT CACGTGGAACACCAATTCACGGCACTGCCACGAAGCCCAGGCTGTGCTGGGCATGCTCCT GCGGCACGAGGCCCCGGAAGAGCTGCTGGCCTACGATGGCGTGCGGGCCTCCCTTGAGGC CCTGCTGCCCTACACTGAGCGGCACTTCCAGCGGCTCAGCCGGACACTGCAGGCGGCCGC CTTCCTGGACTTCCTGTGGCACAGCATGAAGCTGCCCACGCTCCCCGCAGCGCCCCCAGC CCTCTAAACCCCCAGAAAAATGGACTTTGATCTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGTGTGTACACGCACAGCCCCGGCTGCCAGGCCCCGGGCAAGAGCTGACCCACTGTGC CCTGGCCCGAGCCGCCGGCCTGCTCCTCAGCGTCACTGCCGACCACAATCTGCTGCTCTA TGAGGCCCGCTCCCTGCAGCTGCAGAAACAGTTTGCCGGCTACAGTGAGGAGGTGCTGGA CGTCCGGTTCCTCGGGCCCGAGAACTCCCACGTAGTTGTGGCCTCGAACAGCCCCTGCCT AAAAGTGTTTGAGCTGCAGACCTCAGCCTGCCAGATCCTCCACGGCCACACAGACATCGT CCTGGCCCTAGACGTGTTCCGGAAGGGGTGGCTCTTCGCCAGCTGTGCCAAGGATCAGAG CATCCGCATCTGGAGGATAAACAAGGCTGGATTGGTGGCCTGTGTGGCTCAGGGCTCTGG GCACACACACAGCGTGGGCACCATTTGCTGCTCAAGGCTGAAGGAGAGCTTCCTGGTGAC GGGCAGCCAGGACTGCACTGTGAAGCTCTGGCCCCTCCCGGAAGCCCTGCCATCCAGGAG CACTGCCCCCGACAGCGGCCCTGTCCTCCTGCAAGCCCAGGCCACACAGCGCTGCCACGA CAAGGACATCAACAGTGTGGCTATTGCCCCCAACGACAAGCTGCTGGCCACAGGGTCACA GGACCGCACGGCCAAACTCTGGGCTCTGCCCCAGTGCCAGTTGCTGGGCATCTTCTCGGG CCACCGGCGTGGCCTCTGGTGTGTCCAGTTCTCGCCCATGGACCAGGTGCTGGCCACGGC CTCGGCAGACGGCACCGTCAAGCTCTGGGCCCTGCAGGACTTCAGCTGCCTCAAGACGTT CGAGGGGCACGACGCGTCTGTGCTCAGGGTGGCCTTTGTGAGCCGCGGCACGCAGCTGCT GTCCAGCGGCTCCGACGGGCTCGTGAAGCTCTGGACCATCAAGAGCAACGAGTGTGTGAG GACGCTGGACGCCCACGAGGACAAGGTCTGGGGGCTGCACTGCAGTCGGCTGGACGACCG CGCCCTCACCGCTGCCAGCGACTCCCGCGTCATCCTCTGGAAGGATGTGACCGAGGAGGA ACAGGCCGAAGAGGAGGCCAGGAGAGAGGAGGAGGTGGTCAGGCAGCAAGAACTGGACAA CCTGCTCCATGAGAAGCGGTACCTGCGGGCGCTGGGCCTGGCCATCTCCCTGGACCGGCC CCACACCGTGCTGACCGTCATCCAGGCCATCCGAAGGGACCCTGAGTCTTGCGAGAAGCT GGAAGCCACAGTGCTCCAACTGCGGCGAGACCAGAAAGAGGCCTTGCTGCGCTTCTGTGT CACGTGGAACACCAATTCACGGCACTGCCACGAAGCCCAGGCTGTGCTGGGCATGCTCCT GCGGCACGAGGCCCCGGAAGAGCTGCTGGCCTACGATGGCGTGCGGGCCTCCCTTGAGGC CCTGCTGCCCTACACTGAGCGGCACTTCCAGCGGCTCAGCCGGACACTGCAGGCGGCCGC CTTCCTGGACTTCCTGTGGCACAGCATGAAGCTGCCCACGCTCCCCGCAGCGCCCCCAGC CCTCTAAACCCCCAGAAAAATGGACTTTGATCTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 639-835, - strand, RNAz p=0.882446 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 639-835, - strand, RNAz p=0.882446 |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 148-293, gnl|bosTau2|chr25 (3068764-3068619) | |
| 148-293, gnl|canFam2|chr6 (42000347-42000174) | |
| 148-293, gnl|fr1|chrUn (144177333-144177139) | |
| 148-293, gnl|galGal2|chr14 (8188877-8189052) | |
| 148-293, gnl|hg17|chr16 (1965783-1965969) | |
| 148-293, gnl|Hg17|chr16 (1965806-1965951) | |
| 148-293, gnl|loxAfr1|scaffold_157280 (4623-4797) | |
| 148-293, gnl|mm7|chr17 (22886627-22886458) | |
| 148-293, gnl|Mm7|chr17 (22886608-22886463) | |
| 148-293, gnl|monDom2|scaffold_5 (121473213-121473031) | |
| 148-293, gnl|panTro1|chr18_random (6647431-6647245) | |
| 148-293, gnl|rheMac2|chr20 (1958509-1958693) | |
| 148-293, gnl|rn3|chr10 (13956926-13956759) | |
| 148-293, gnl|tetNig1|chr3 (9033831-9033636) | |
| 148-293, gnl|xenTro1|scaffold_142 (2008092-2007895) | |
| 348-457, gnl|bosTau2|chr25 (3068389-3068280) | |
| 348-457, gnl|canFam2|chr6 (41999968-41999872) | |
| 348-457, gnl|echTel1|scaffold_273732 (8506-8599) | |
| 348-457, gnl|fr1|chrUn (144176557-144176437) | |
| 348-457, gnl|hg17|chr16 (1966187-1966282) | |
| 348-457, gnl|Hg17|chr16 (1966208-1966317) | |
| 348-457, gnl|loxAfr1|scaffold_157280 (4987-5083) | |
| 348-457, gnl|mm7|chr17 (22885698-22885601) | |
| 348-457, gnl|Mm7|chr17 (22885673-22885564) | |
| 348-457, gnl|monDom2|scaffold_5 (121472513-121472417) | |
| 348-457, gnl|panTro1|chr18_random (6647027-6646932) | |
| 348-457, gnl|rheMac2|chr20 (1958911-1959006) | |
| 348-457, gnl|rn3|chr10 (13956442-13956345) | |
| 348-457, gnl|tetNig1|chr3 (9033030-9032915) | |
| 600-835, gnl|bosTau2|chr25 (3067698-3067463) | |
| 600-835, gnl|canFam2|chr6 (41999123-41998870) | |
| 600-835, gnl|danRer3|chrNA (76355996-76355761) | |
| 600-835, gnl|dasNov1|scaffold_159176 (3315-3570) | |
| 600-835, gnl|echTel1|scaffold_273732 (9005-9263) | |
| 600-835, gnl|fr1|chrUn (144175646-144175384) | |
| 600-835, gnl|galGal2|chr14 (8190918-8191182) | |
| 600-835, gnl|hg17|chr16 (1967040-1967293) | |
| 600-835, gnl|Hg17|chr16 (1967051-1967286) | |
| 600-835, gnl|loxAfr1|scaffold_53041 (12530-12783) | |
| 600-835, gnl|mm7|chr17 (22884720-22884467) | |
| 600-835, gnl|Mm7|chr17 (22884707-22884472) | |
| 600-835, gnl|monDom2|scaffold_5 (121470397-121470145) | |
| 600-835, gnl|panTro1|chr18_random (6646173-6645920) | |
| 600-835, gnl|rheMac2|chr20 (1959760-1960013) | |
| 600-835, gnl|rn3|chr10 (13955636-13955383) | |
| 600-835, gnl|tetNig1|chr3 (9031961-9031713) | |
| 903-1069, gnl|bosTau2|chr25 (3067235-3067070) | |
| 903-1069, gnl|Hg17|chr16 (1967512-1967676) | |
| 903-1069, gnl|Mm7|chr17 (22884229-22884064) | |
| 1120-1226, gnl|bosTau2|chr25 (3066806-3066700) | |
| 1120-1226, gnl|canFam2|chr6 (41998088-41997964) | |
| 1120-1226, gnl|echTel1|scaffold_273732 (10024-10145) | |
| 1120-1226, gnl|fr1|chrUn (144174342-144174234) | |
| 1120-1226, gnl|galGal2|chr14 (8193048-8193178) | |
| 1120-1226, gnl|hg17|chr16 (1967958-1968083) | |
| 1120-1226, gnl|Hg17|chr16 (1967957-1968063) | |
| 1120-1226, gnl|loxAfr1|scaffold_53041 (13497-13628) | |
| 1120-1226, gnl|mm7|chr17 (22883714-22883589) | |
| 1120-1226, gnl|Mm7|chr17 (22883713-22883607) | |
| 1120-1226, gnl|monDom2|scaffold_5 (121469493-121469366) | |
| 1120-1226, gnl|panTro1|chr18_random (6645255-6645130) | |
| 1120-1226, gnl|rheMac2|chr20 (1960924-1961047) | |
| 1120-1226, gnl|rn3|chr10 (13954687-13954563) | |
| 1120-1226, gnl|tetNig1|chr3 (9030593-9030477) | |
| 1120-1226, gnl|xenTro1|scaffold_142 (2004375-2004250) | |
| 1297-1455, gnl|bosTau2|chr25 (3066459-3066301) | |
| 1297-1455, gnl|canFam2|chr6 (41997738-41997539) | |
| 1297-1455, gnl|echTel1|scaffold_273732 (10360-10561) | |
| 1297-1455, gnl|fr1|chrUn (144173811-144173606) | |
| 1297-1455, gnl|galGal2|chr14 (8193650-8193861) | |
| 1297-1455, gnl|hg17|chr16 (1968302-1968500) | |
| 1297-1455, gnl|Hg17|chr16 (1968313-1968471) | |
| 1297-1455, gnl|loxAfr1|scaffold_53041 (13923-14120) | |
| 1297-1455, gnl|mm7|chr17 (22883375-22883179) | |
| 1297-1455, gnl|Mm7|chr17 (22883363-22883205) | |
| 1297-1455, gnl|monDom2|scaffold_5 (121469140-121468941) | |
| 1297-1455, gnl|panTro1|chr18_random (6644911-6644713) | |
| 1297-1455, gnl|rheMac2|chr20 (1961266-1961464) | |
| 1297-1455, gnl|rn3|chr10 (13954343-13954146) | |
| 1297-1455, gnl|tetNig1|chr3 (9030156-9029946) | |
| 1297-1455, gnl|xenTro1|scaffold_142 (2003494-2003303) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-293, gnl|bosTau2|chr25 (3068764-3068619) | |
| 148-293, gnl|canFam2|chr6 (42000347-42000174) | |
| 148-293, gnl|fr1|chrUn (144177333-144177139) | |
| 148-293, gnl|galGal2|chr14 (8188877-8189052) | |
| 148-293, gnl|hg17|chr16 (1965783-1965969) | |
| 148-293, gnl|Hg17|chr16 (1965806-1965951) | |
| 148-293, gnl|loxAfr1|scaffold_157280 (4623-4797) | |
| 148-293, gnl|mm7|chr17 (22886627-22886458) | |
| 148-293, gnl|Mm7|chr17 (22886608-22886463) | |
| 148-293, gnl|monDom2|scaffold_5 (121473213-121473031) | |
| 148-293, gnl|panTro1|chr18_random (6647431-6647245) | |
| 148-293, gnl|rheMac2|chr20 (1958509-1958693) | |
| 148-293, gnl|rn3|chr10 (13956926-13956759) | |
| 148-293, gnl|tetNig1|chr3 (9033831-9033636) | |
| 148-293, gnl|xenTro1|scaffold_142 (2008092-2007895) | |
| 348-457, gnl|bosTau2|chr25 (3068389-3068280) | |
| 348-457, gnl|canFam2|chr6 (41999968-41999872) | |
| 348-457, gnl|echTel1|scaffold_273732 (8506-8599) | |
| 348-457, gnl|fr1|chrUn (144176557-144176437) | |
| 348-457, gnl|hg17|chr16 (1966187-1966282) | |
| 348-457, gnl|Hg17|chr16 (1966208-1966317) | |
| 348-457, gnl|loxAfr1|scaffold_157280 (4987-5083) | |
| 348-457, gnl|mm7|chr17 (22885698-22885601) | |
| 348-457, gnl|Mm7|chr17 (22885673-22885564) | |
| 348-457, gnl|monDom2|scaffold_5 (121472513-121472417) | |
| 348-457, gnl|panTro1|chr18_random (6647027-6646932) | |
| 348-457, gnl|rheMac2|chr20 (1958911-1959006) | |
| 348-457, gnl|rn3|chr10 (13956442-13956345) | |
| 348-457, gnl|tetNig1|chr3 (9033030-9032915) | |
| 600-835, gnl|bosTau2|chr25 (3067698-3067463) | |
| 600-835, gnl|canFam2|chr6 (41999123-41998870) | |
| 600-835, gnl|danRer3|chrNA (76355996-76355761) | |
| 600-835, gnl|dasNov1|scaffold_159176 (3315-3570) | |
| 600-835, gnl|echTel1|scaffold_273732 (9005-9263) | |
| 600-835, gnl|fr1|chrUn (144175646-144175384) | |
| 600-835, gnl|galGal2|chr14 (8190918-8191182) | |
| 600-835, gnl|hg17|chr16 (1967040-1967293) | |
| 600-835, gnl|Hg17|chr16 (1967051-1967286) | |
| 600-835, gnl|loxAfr1|scaffold_53041 (12530-12783) | |
| 600-835, gnl|mm7|chr17 (22884720-22884467) | |
| 600-835, gnl|Mm7|chr17 (22884707-22884472) | |
| 600-835, gnl|monDom2|scaffold_5 (121470397-121470145) | |
| 600-835, gnl|panTro1|chr18_random (6646173-6645920) | |
| 600-835, gnl|rheMac2|chr20 (1959760-1960013) | |
| 600-835, gnl|rn3|chr10 (13955636-13955383) | |
| 600-835, gnl|tetNig1|chr3 (9031961-9031713) | |
| 903-1069, gnl|bosTau2|chr25 (3067235-3067070) | |
| 903-1069, gnl|Hg17|chr16 (1967512-1967676) | |
| 903-1069, gnl|Mm7|chr17 (22884229-22884064) | |
| 1120-1226, gnl|bosTau2|chr25 (3066806-3066700) | |
| 1120-1226, gnl|canFam2|chr6 (41998088-41997964) | |
| 1120-1226, gnl|echTel1|scaffold_273732 (10024-10145) | |
| 1120-1226, gnl|fr1|chrUn (144174342-144174234) | |
| 1120-1226, gnl|galGal2|chr14 (8193048-8193178) | |
| 1120-1226, gnl|hg17|chr16 (1967958-1968083) | |
| 1120-1226, gnl|Hg17|chr16 (1967957-1968063) | |
| 1120-1226, gnl|loxAfr1|scaffold_53041 (13497-13628) | |
| 1120-1226, gnl|mm7|chr17 (22883714-22883589) | |
| 1120-1226, gnl|Mm7|chr17 (22883713-22883607) | |
| 1120-1226, gnl|monDom2|scaffold_5 (121469493-121469366) | |
| 1120-1226, gnl|panTro1|chr18_random (6645255-6645130) | |
| 1120-1226, gnl|rheMac2|chr20 (1960924-1961047) | |
| 1120-1226, gnl|rn3|chr10 (13954687-13954563) | |
| 1120-1226, gnl|tetNig1|chr3 (9030593-9030477) | |
| 1120-1226, gnl|xenTro1|scaffold_142 (2004375-2004250) | |
| 1297-1455, gnl|bosTau2|chr25 (3066459-3066301) | |
| 1297-1455, gnl|canFam2|chr6 (41997738-41997539) | |
| 1297-1455, gnl|echTel1|scaffold_273732 (10360-10561) | |
| 1297-1455, gnl|fr1|chrUn (144173811-144173606) | |
| 1297-1455, gnl|galGal2|chr14 (8193650-8193861) | |
| 1297-1455, gnl|hg17|chr16 (1968302-1968500) | |
| 1297-1455, gnl|Hg17|chr16 (1968313-1968471) | |
| 1297-1455, gnl|loxAfr1|scaffold_53041 (13923-14120) | |
| 1297-1455, gnl|mm7|chr17 (22883375-22883179) | |
| 1297-1455, gnl|Mm7|chr17 (22883363-22883205) | |
| 1297-1455, gnl|monDom2|scaffold_5 (121469140-121468941) | |
| 1297-1455, gnl|panTro1|chr18_random (6644911-6644713) | |
| 1297-1455, gnl|rheMac2|chr20 (1961266-1961464) | |
| 1297-1455, gnl|rn3|chr10 (13954343-13954146) | |
| 1297-1455, gnl|tetNig1|chr3 (9030156-9029946) | |
| 1297-1455, gnl|xenTro1|scaffold_142 (2003494-2003303) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nje (0.33184) | |
| csp (0.322373) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| csp (0.322373) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |