Non-Coding RNA Search

Ss1.1-Pig4-TMW8067A16.3

Sequence:


               
               CCCACCTCCTCATGCATTACTAGTCGGATTGTTTCTGCTATGCCACCACAGGAACTCCTA
AAGGGGATTTTAATTGTTCAAAAATTTAAATCTGAACCTCAAGGAAGTATTTTTGACTCT
GAAAAGCCAGGGGAGTCCTCACAAATGCCCTGTCAGGGGTCCCGAGAGGAAAAACGCAGC
TATGGGGAAGATGCTGGCTTGACTCAGCAAGTTCAGCAAGAGTCTTGGCCTAAAACTGGA
TTATTTCAAAAAGTTACATATTAATGCATTGTTTTCGGAATGAAATGCTAACTTAATTTG
GTGGCAGAAAACTAATATTTCATAGGTGTTTTCCAAAAAAAAGAAATTTGAATGTTTCCT
GTTATCTTTATACTTCTTTTGAGAATTTAGTGTGAAACCACTTACTTTGTCATTTGCAAT
TTAAAAACAATGTTTGAGAAAATCTGTATAAAGCCAAAGTTAAAATGAAGTTATATGTTT
TGGGAATAGCACTTTACAGTAAATGTCACTTCTTGAATCTTCAAACCTAAATATTTTTTG
AAATAGAAATACAGCTATTCTTCTACATTTTTTTTTCCTAGTGATGATCATAGTAAAATT
TTATCTGGTTCCGCAATGTGATTTCTTTAAAGTATTATAAGTATTCGTGAAAAATGAGCA
GAGAGATCAGAGCTTTTAAAAATTTGTATAAAATATTTGGGATATTCTGACTTTATACAT
GCATACCTTTGTATTTTACTTTTCTTTGGGGAGCGGCATTTTTCAAAAACCAGTAAGGAA
AATGTAGATCTTGGAGATTACCCTTGCTATCTAAATGGAATTTTACTGTTACCTTCCAGG
TGCCTATACTGTTTATTTCAAAATGCAGAGATTCCTGGGAATGATGTGTTTTGTGGAATC
AAGAGCAAAATTGTGGTGGGATGATTCTGCATCTTAAATTTTTCTTTGTATCACTGCAAG
CTCTATTTTGAAATTGAGTAGAAAAGCAAAAGAAATAGGTAACTTCCGTAGATCCACTGT
ACCATTTGGCCTTTTTTTCAGATTGTGATTTCACTAATAGAGCAGATATTTATGATAATA
TTTTCTTATTTCAAAAGCATAATAAAATGAGTTTATAACTGTGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCTCCTCATGCATTACTAGTCGGATTGTTTCTGCTATGCCACCACAGGAACTCCTA
AAGGGGATTTTAATTGTTCAAAAATTTAAATCTGAACCTCAAGGAAGTATTTTTGACTCT
GAAAAGCCAGGGGAGTCCTCACAAATGCCCTGTCAGGGGTCCCGAGAGGAAAAACGCAGC
TATGGGGAAGATGCTGGCTTGACTCAGCAAGTTCAGCAAGAGTCTTGGCCTAAAACTGGA
TTATTTCAAAAAGTTACATATTAATGCATTGTTTTCGGAATGAAATGCTAACTTAATTTG
GTGGCAGAAAACTAATATTTCATAGGTGTTTTCCAAAAAAAAGAAATTTGAATGTTTCCT
GTTATCTTTATACTTCTTTTGAGAATTTAGTGTGAAACCACTTACTTTGTCATTTGCAAT
TTAAAAACAATGTTTGAGAAAATCTGTATAAAGCCAAAGTTAAAATGAAGTTATATGTTT
TGGGAATAGCACTTTACAGTAAATGTCACTTCTTGAATCTTCAAACCTAAATATTTTTTG
AAATAGAAATACAGCTATTCTTCTACATTTTTTTTTCCTAGTGATGATCATAGTAAAATT
TTATCTGGTTCCGCAATGTGATTTCTTTAAAGTATTATAAGTATTCGTGAAAAATGAGCA
GAGAGATCAGAGCTTTTAAAAATTTGTATAAAATATTTGGGATATTCTGACTTTATACAT
GCATACCTTTGTATTTTACTTTTCTTTGGGGAGCGGCATTTTTCAAAAACCAGTAAGGAA
AATGTAGATCTTGGAGATTACCCTTGCTATCTAAATGGAATTTTACTGTTACCTTCCAGG
TGCCTATACTGTTTATTTCAAAATGCAGAGATTCCTGGGAATGATGTGTTTTGTGGAATC
AAGAGCAAAATTGTGGTGGGATGATTCTGCATCTTAAATTTTTCTTTGTATCACTGCAAG
CTCTATTTTGAAATTGAGTAGAAAAGCAAAAGAAATAGGTAACTTCCGTAGATCCACTGT
ACCATTTGGCCTTTTTTTCAGATTGTGATTTCACTAATAGAGCAGATATTTATGATAATA
TTTTCTTATTTCAAAAGCATAATAAAATGAGTTTATAACTGTGAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               133-1117, gnl|bosTau2|chr26 (7274856-7275853)
               

               
               133-1117, gnl|Hg17|chr10 (91181322-91180044)
               

               
               133-1117, gnl|Mm7|chr19 (34370626-34369713)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-1117, gnl|bosTau2|chr26 (7274856-7275853)
               

               
               133-1117, gnl|Hg17|chr10 (91181322-91180044)
               

               
               133-1117, gnl|Mm7|chr19 (34370626-34369713)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               kid (1.16762)
               

               
               cki (0.495704)
               

               
               nlu (0.191681)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.16762)
               

               
               cki (0.495704)
               

               
               nlu (0.191681)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	133-1117, gnl\|bosTau2\|chr26 (7274856-7275853)
	133-1117, gnl\|Hg17\|chr10 (91181322-91180044)
	133-1117, gnl\|Mm7\|chr19 (34370626-34369713)

	kid (1.16762)
	cki (0.495704)
	nlu (0.191681)
	lun (0.150489)
	fat (0.147427)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	spc (0.113366)