Non-Coding RNA Search

Ss1.1-Pig4-TMW8067B03.3

Sequence:


               
               AAATAATATTACAGAGTTTGCTTAAAGAAGGCATAAATCCAATGATGGCATTGTTAAGAT
CTGTTTAACGTTTAAGGTGGTATAGAATAGACAAATTTAAAAATTTAGTACAATTTTGCC
CATAATTTTATGTAAGTTGTTTATTTATTAGGTTTTGATACTTATAGAGGACCTCCTTCA
ATTTCCAATGGAAATTATAGCCAGCTACAGTTCCAAGCTAGAGAGTATCCCGGAACACCT
TATTCCCAAAGGGATAACTTCCAGCAGTGTTACAAGCGAGGAGGGACATCTGGTGGTCCT
CGGGCAAATTCTAGAGCAGGGTGGAGTGATTCTTCTCAGGTGAGCAGCCCAGAAAGAGAC
AACGAAACGTTTAACAGTGGTGACTCTGGACAAGGAGACTCGCGTAGCATGACCCCTGTG
GATGTGCCAGTGACAAACCCAGCAGCCACCATACTGCCAGTACACGTGTATCCCCTGCCT
CAGCAGATGCGAGTTGCCTTCTCAGCAGCCAGAACCTCTAATCTTGCCCCTGGAACTTTA
GACCAACCTATTGTGTTTGATCTTCTTCTGAACAACTTGGGAGAAACTTTTGATCTTCAG
CTTGGTAGATTTAATTGCCCGGTGAATGGCACATATGTTTTCATTTTTCACATGCTAAAG
CTGGCAGTGAATGTGCCACTGTATGTCAACCTCATGAAGAATGAAGAGGTCTTGGTATCT
GCCTATGCCAATGATGGTGCTCCAGACCATGAAACTGCTAGCAATCATGCAATTCTTCAG
CTCTTCCAGGGAGACCAGATATGGTTACGTTTGCACAGGGGAGCAATTTATGGAAGTAGT
TGGAAATATTCTACATTTTCAGGCTATCTTCTTTACCAAGATTGAAAGTCAGTACAGAAT
TGACGATGAAAGGATATGGTATTCGAATTAGTGGGAATAAAAGAAAAGTAGTCCTTGCCC
TTGTGATTGATGGTTTAGGAAAATGTTTTCATTCCTAGAGGAAGGAGGAGGTCCTTACTT
TTTTGTTTTCCTCCCCATGGTGAAAAATATCAAGCTGAATGACAATTAGCACTAATCTGG
CACTTTATAAATTGTGATGTAGCCTCGCTAGTCAAGCTGTGAATGTATATTGTTTGCACT
TAATCCTTAACTGTATTAACGTTCAGCTTACTAAACTAACTGCCTCAAGTTTAGGCGAGT
TATAATGCCTTGTTGTGCCTCAATAAAAAAGTTACATGCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATAATATTACAGAGTTTGCTTAAAGAAGGCATAAATCCAATGATGGCATTGTTAAGAT
CTGTTTAACGTTTAAGGTGGTATAGAATAGACAAATTTAAAAATTTAGTACAATTTTGCC
CATAATTTTATGTAAGTTGTTTATTTATTAGGTTTTGATACTTATAGAGGACCTCCTTCA
ATTTCCAATGGAAATTATAGCCAGCTACAGTTCCAAGCTAGAGAGTATCCCGGAACACCT
TATTCCCAAAGGGATAACTTCCAGCAGTGTTACAAGCGAGGAGGGACATCTGGTGGTCCT
CGGGCAAATTCTAGAGCAGGGTGGAGTGATTCTTCTCAGGTGAGCAGCCCAGAAAGAGAC
AACGAAACGTTTAACAGTGGTGACTCTGGACAAGGAGACTCGCGTAGCATGACCCCTGTG
GATGTGCCAGTGACAAACCCAGCAGCCACCATACTGCCAGTACACGTGTATCCCCTGCCT
CAGCAGATGCGAGTTGCCTTCTCAGCAGCCAGAACCTCTAATCTTGCCCCTGGAACTTTA
GACCAACCTATTGTGTTTGATCTTCTTCTGAACAACTTGGGAGAAACTTTTGATCTTCAG
CTTGGTAGATTTAATTGCCCGGTGAATGGCACATATGTTTTCATTTTTCACATGCTAAAG
CTGGCAGTGAATGTGCCACTGTATGTCAACCTCATGAAGAATGAAGAGGTCTTGGTATCT
GCCTATGCCAATGATGGTGCTCCAGACCATGAAACTGCTAGCAATCATGCAATTCTTCAG
CTCTTCCAGGGAGACCAGATATGGTTACGTTTGCACAGGGGAGCAATTTATGGAAGTAGT
TGGAAATATTCTACATTTTCAGGCTATCTTCTTTACCAAGATTGAAAGTCAGTACAGAAT
TGACGATGAAAGGATATGGTATTCGAATTAGTGGGAATAAAAGAAAAGTAGTCCTTGCCC
TTGTGATTGATGGTTTAGGAAAATGTTTTCATTCCTAGAGGAAGGAGGAGGTCCTTACTT
TTTTGTTTTCCTCCCCATGGTGAAAAATATCAAGCTGAATGACAATTAGCACTAATCTGG
CACTTTATAAATTGTGATGTAGCCTCGCTAGTCAAGCTGTGAATGTATATTGTTTGCACT
TAATCCTTAACTGTATTAACGTTCAGCTTACTAAACTAACTGCCTCAAGTTTAGGCGAGT
TATAATGCCTTGTTGTGCCTCAATAAAAAAGTTACATGCAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61838777|ref|XP_591139.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61838777|ref|XP_591139.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               911-1029, - strand, RNAz p=0.518017

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               911-1029, - strand, RNAz p=0.518017

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               872-1196, gnl|bosTau2|chr8 (5924754-5925075)
               

               
               872-1196, gnl|Hg17|chr12 (30754109-30753798)
               

               
               872-1196, gnl|Mm7|chr6 (148921162-148920855)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               872-1196, gnl|bosTau2|chr8 (5924754-5925075)
               

               
               872-1196, gnl|Hg17|chr12 (30754109-30753798)
               

               
               872-1196, gnl|Mm7|chr6 (148921162-148920855)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ret (0.257467)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	872-1196, gnl\|bosTau2\|chr8 (5924754-5925075)
	872-1196, gnl\|Hg17\|chr12 (30754109-30753798)
	872-1196, gnl\|Mm7\|chr6 (148921162-148920855)

	ret (0.257467)
	tes (0.207814)
	cmu (0.186393)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	sug (0.127291)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)